PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462848618 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | AP2 | ||||||||
Protein Properties | Length: 476aa MW: 53126.5 Da PI: 4.8974 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 32.7 | 1.8e-10 | 179 | 235 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s ++GV++++++g+++A+++d + g +rk + g+++ +e+Aa+a++ a++k++g 462848618 179 SSFHGVTRHRWSGKYEAHLWDsSCRvEGrRRKGKQ-GSYDAEEKAARAYDVAALKYWG 235 5799*****************77668776667777.99******************98 PP | |||||||
2 | AP2 | 36.5 | 1.2e-11 | 267 | 311 | 7 | 55 |
AP2 7 rwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 r + k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g 462848618 267 R-RQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 311 4.5569******9995.....234************************998 PP | |||||||
3 | AP2 | 38.7 | 2.5e-12 | 378 | 425 | 5 | 55 |
AP2 5 GVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 r++ k+grW A+I + + ++lg+f t+eeAa+a++ a+ +++g 462848618 378 YLRRRQKDGRWQARIGLV-----AgtRDIYLGTFKTEEEAAEAYDIAAIEIRG 425 5689999*******9995.....234************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.67E-16 | 179 | 245 | No hit | No description |
SuperFamily | SSF54171 | 2.35E-14 | 180 | 245 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-13 | 180 | 244 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.5E-7 | 180 | 235 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.517 | 180 | 243 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-22 | 180 | 249 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-5 | 181 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.448 | 259 | 319 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.7E-16 | 267 | 320 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-5 | 267 | 311 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.34E-18 | 267 | 319 | No hit | No description |
SMART | SM00380 | 2.6E-21 | 267 | 325 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.79E-14 | 267 | 321 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.2E-5 | 301 | 321 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-8 | 326 | 358 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.3E-4 | 326 | 362 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-9 | 327 | 357 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 10.56 | 327 | 356 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.988 | 372 | 433 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.5E-6 | 380 | 425 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-14 | 381 | 435 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.34E-18 | 381 | 433 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.0E-16 | 381 | 434 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.6E-21 | 381 | 439 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
MEESEVGVNH TKQMEEKDKA AGESGDEGKM ERSQSINLNR VPAVAKEASR TQKNDETQSA 60 VVSEANDSST YKAKECSGAD QMKSPKLERV DYEGENEGHT ENPAKEASLV TVVGNEGRAD 120 YGDEDGRAQV LSIVKKDEPA DEDGAAINPV TIAGFREDNA VVAASAGVTN VRPAGSRSSS 180 FHGVTRHRWS GKYEAHLWDS SCRVEGRRRK GKQGSYDAEE KAARAYDVAA LKYWGPNTRL 240 NFPVSQYEKE LQDIKDLSPE ECVTYLRRQK DGRWQARIGL VAGTRDIYLG TFKTEEEAAE 300 AYDIAAIEIR GKNAVTNFDR SNYMDRGSYD AEEKAARAYD VAALKYWGPN TRLNFPVSQY 360 EKELQDIKDL SQEECVTYLR RRQKDGRWQA RIGLVAGTRD IYLGTFKTEE EAAEAYDIAA 420 IEIRGKNAVT NFDRSNYMDR VSEIPPLIRS VPVGSELATS EVVPERVAKQ QQQQQE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 205 | 212 | GRRRKGKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462848618 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT035212 | 4e-65 | BT035212.1 Zea mays full-length cDNA clone ZM_BFb0046C03 mRNA, complete cds. | |||
GenBank | EU957460 | 4e-65 | EU957460.1 Zea mays clone 1593084 protein BABY BOOM 2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004953856.1 | 1e-173 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q6PQQ3 | 2e-62 | AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5 | ||||
TrEMBL | K3YTI5 | 1e-172 | K3YTI5_SETIT; Uncharacterized protein | ||||
STRING | Si017580m | 1e-173 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11888 | 29 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 2e-53 | AP2 family protein |
Publications ? help Back to Top | |||
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