PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 462848454 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
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Family | NAC | ||||||||
Protein Properties | Length: 281aa MW: 31144.3 Da PI: 7.0852 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.1 | 3.6e-49 | 6 | 134 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtd el v+yLk+kv gk++++ ++i e+d+yk+ Pw+Lp+ ++++++ wyfF++rdkky+ g r+nr+t +gyWkatgkd++v+ +++ 462848454 6 LPPGFRFHPTDVELTVYYLKRKVLGKHIRC-NAIVEIDLYKFAPWELPEkaSLESNDLVWYFFCPRDKKYSIGVRTNRTTGAGYWKATGKDRAVIY-NSR 103 79****************************.89***************52355556669*************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 +vg+k+tLvf+ g+ p+g +tdWvm eyrle 462848454 104 TVGMKRTLVFHLGKPPQGCRTDWVMYEYRLE 134 *****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-59 | 3 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.237 | 6 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-26 | 7 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MAKTSLPPGF RFHPTDVELT VYYLKRKVLG KHIRCNAIVE IDLYKFAPWE LPEKASLESN 60 DLVWYFFCPR DKKYSIGVRT NRTTGAGYWK ATGKDRAVIY NSRTVGMKRT LVFHLGKPPQ 120 GCRTDWVMYE YRLEEKELAA SGVKLDACVL CKIFQKSGPG PKIGAQYGAP FNEADWNDAN 180 VEYSSFVPSA IPCAPESSHN GLNSAGQHLA ASDDGNVSLG LSPGSNIELA ANGVQVRPDR 240 TSPDIPFDII HLELLAEIIN RSSLNRLFTA GEEGSQDPDQ M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-52 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-52 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-52 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-52 | 1 | 162 | 12 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-52 | 1 | 162 | 15 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-52 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-52 | 1 | 162 | 12 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 462848454 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT068371 | 1e-177 | BT068371.1 Zea mays full-length cDNA clone ZM_BFb0135E15 mRNA, complete cds. | |||
GenBank | BT068532 | 1e-177 | BT068532.1 Zea mays full-length cDNA clone ZM_BFb0292O13 mRNA, complete cds. | |||
GenBank | BT083901 | 1e-177 | BT083901.1 Zea mays full-length cDNA clone ZM_BFb0052I14 mRNA, complete cds. | |||
GenBank | KJ727952 | 1e-177 | KJ727952.1 Zea mays clone pUT6050 NAC transcription factor (NAC120) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025823524.1 | 1e-159 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823525.1 | 1e-159 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823526.1 | 1e-159 | NAC domain-containing protein 82-like | ||||
Refseq | XP_025823527.1 | 1e-159 | NAC domain-containing protein 82-like | ||||
Swissprot | Q9FY82 | 1e-76 | NAC82_ARATH; NAC domain-containing protein 82 | ||||
TrEMBL | A0A2S3IBX8 | 1e-158 | A0A2S3IBX8_9POAL; Uncharacterized protein | ||||
STRING | Si022216m | 1e-157 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4731 | 36 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64060.1 | 3e-80 | NAC domain containing protein 103 |
Publications ? help Back to Top | |||
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