PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

462848111

Organism

Eragrostis tef

Taxonomic ID

110835

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis

Family

NF-YC

Protein Properties

Length: 291aa MW: 31521 Da PI: 11.0858

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
462848111	genome	Tef	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	38	3.5e-12	184	269	13	98
NF-YC 13 atdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 + d+ ++P+ar++++++a++d + s +a l+ ka elf+ +++ ++ +a + +++++ +++++v + + f+fl d +p+ 462848111 184 VPDMGTCSFPMARVRQLMRAEDDTIRASHDAVFLINKASELFLAKFAENAYRNALKDRKKSIIYDNLSTTVCNQKGFKFLSDFIPQ 269 56778889***************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.53E-16	176	269	IPR009072	Histone-fold
Pfam	PF00808	1.5E-11	191	252	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	5.5E-19	192	269	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MAGKKPTPPQ AGAKRKKPQA SGEAGTPKKK KGKKGGEPEI KPQKEATSTK KQQSSGKSEN 60 PAPTPTKKQQ PTSRSENPAP TPTKKQQQSV KSPKSATKQQ SSGKVEKPAS AATTPAPTKK 120 QQKEAKREKQ QVPGGKGKST PTKRKRDGTE PQKEPRSPKR ASGDGEAGTP TPVKKKRKDK 180 KAAVPDMGTC SFPMARVRQL MRAEDDTIRA SHDAVFLINK ASELFLAKFA ENAYRNALKD 240 RKKSIIYDNL STTVCNQKGF KFLSDFIPQR LRAEDALKAA AGANSNKVLE I

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	33	KRKKPQASGEAGTPKKKKGKK
2	14	30	RKKPQASGEAGTPKKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	462848111

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004981017.1	1e-101	pollen-specific leucine-rich repeat extensin-like protein 1
TrEMBL	A0A0A8YHY9	1e-109	A0A0A8YHY9_ARUDO; Uncharacterized protein
STRING	Pavir.Ia00103.1.p	3e-97	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12826	19	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	1e-25	nuclear factor Y, subunit C10