PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462847115
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB
Protein Properties Length: 405aa    MW: 45129.7 Da    PI: 5.6603
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462847115genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.7e-18107153148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd +lv++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
        462847115 107 KGQWTPEEDRKLVKLVEQFGLRKWSCIAQILP-GRVGKQCRERWHNHL 153
                      799*****************************.*************97 PP
2Myb_DNA-binding52.51.2e-16161201345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W+ eEd  l++a+k+ G++ W+ Ia++++ gRt++++k++w+
        462847115 161 IWSDEEDMVLIQAHKEVGNK-WAEIAKRLP-GRTENSIKNHWN 201
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.487102157IPR017930Myb domain
SuperFamilySSF466892.18E-31104200IPR009057Homeodomain-like
SMARTSM007171.2E-14106155IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-29108161IPR009057Homeodomain-like
CDDcd001673.05E-15110153No hitNo description
PfamPF139211.2E-18110167No hitNo description
SMARTSM007172.5E-16158206IPR001005SANT/Myb domain
PROSITE profilePS5129419.544158208IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-21162206IPR009057Homeodomain-like
CDDcd001671.16E-13162204No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MQPSGPYELH PVDHSFEDIG EYTSAGSMVP SATFNDLGYQ YNSEREIKRP FVNQVGSYLP  60
LLTPKTEVSH LIESGIGSYK AYEMNARFVP RSRKASSNSL KKANVVKGQW TPEEDRKLVK  120
LVEQFGLRKW SCIAQILPGR VGKQCRERWH NHLRPNIKKD IWSDEEDMVL IQAHKEVGNK  180
WAEIAKRLPG RTENSIKNHW NATKRRQFAR RRSRSSKGPK SGTLLQSYIK SLGIGPISRN  240
VVAPVAAQPT TPPSSPAFLT AKPSAKTNNG SPEHSPSSIL NTQGMFSIQE NYCGETRSFE  300
ELLAPICDDF SVDMCEGLFD TSAELFQVCG MDDDVDMNSI FNHLDYAGKA DNGIDMEMTW  360
DDDVLADCVG LESGRSAQIE VAHVEEELDL VEMIAATQNS AGAED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-461052072104C-Myb DNA-Binding Domain
1msf_C4e-461052072104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap462847115
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796038.10.0transcription factor MYB41-like
TrEMBLA0A1E5V2V30.0A0A1E5V2V3_9POAL; Transcription factor MYB98
STRINGPavir.J02497.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28063788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-62myb domain protein 98