PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 462845465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 513aa MW: 55493.8 Da PI: 7.6753 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35 | 3.5e-11 | 120 | 152 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgt 38 s+y+GV++++++grW+++I+d + k+++lgkf + 462845465 120 SQYRGVTFYRRTGRWESHIWD------TgKQVYLGKFSF 152 78*******************......44********98 PP | |||||||
2 | AP2 | 42.1 | 2.1e-13 | 241 | 291 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a+ +++g 462845465 241 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDRAAIRFNG 291 89********.7******...5...334336**********99**********99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.88E-5 | 120 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-4 | 120 | 152 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.14E-18 | 121 | 206 | No hit | No description |
SMART | SM00380 | 1.3E-21 | 121 | 212 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.646 | 121 | 206 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-7 | 174 | 207 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.0E-9 | 175 | 206 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.78E-24 | 241 | 301 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-16 | 241 | 300 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.6E-9 | 241 | 291 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-30 | 242 | 305 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-15 | 242 | 299 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.988 | 242 | 299 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 243 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-5 | 281 | 301 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 513 aa Download sequence Send to blast |
PARGGGSGAV DSGQIARAVE QEAASPTSSH AGGGGGFFRF DLLNWSPDEE GSSPPVVTRQ 60 LFPSPSSPRP GALPSDGSPP PSSVVVGPWT FGAANHAAAT PSPAPSPGKK SRRGPRSRSS 120 QYRGVTFYRR TGRWESHIWD TGKQVYLGKF SFLVRAIFGE LSASVQFADA VVPLLIGGFD 180 TAHEAARAYD RAAIKFRGLD ADINFDLKDY EDDLKQMRNW SKEEFVHILR RQSTGFARGS 240 SKYRGVTLHK CGRWEARMGQ LLGKKYIYLG LFDSEIEAAR AYDRAAIRFN GKDSVTNFDP 300 SCYDGDVPPD IEKDGTSTLG CSTVKLKLQA YDRAAIRFNG KDSVTNFDPS CYDGDVPPDI 360 EKDEVLDGDI LDLNLRISQP NVHHLKSDGI LTGLRPSGES PEASTVVSPQ PGSPQWPIHS 420 QSTSTPTQHS HLYASPCPGF FVNFREAAME EKRAETVGPP PFPPWAWRMQ GFSPVPSLTA 480 TAASSGFSTA TGAGVPSTHP RQFANGYHFP PTA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 462845465 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT063357 | 7e-42 | BT063357.1 Zea mays full-length cDNA clone ZM_BFc0055O08 mRNA, complete cds. | |||
GenBank | BT088249 | 7e-42 | BT088249.1 Zea mays full-length cDNA clone ZM_BFc0098F06 mRNA, complete cds. | |||
GenBank | EU974186 | 7e-42 | EU974186.1 Zea mays clone 442332 floral homeotic protein mRNA, complete cds. | |||
GenBank | FJ686697 | 7e-42 | FJ686697.1 Zea mays sister of indeterminate spikelet 1 (sid1) mRNA, partial cds. | |||
GenBank | KJ726939 | 7e-42 | KJ726939.1 Zea mays clone pUT3485 AP2-EREBP transcription factor (EREB121) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459580.1 | 1e-163 | floral homeotic protein APETALA 2 isoform X2 | ||||
Swissprot | Q8H443 | 1e-160 | AP23_ORYSJ; APETALA2-like protein 3 | ||||
TrEMBL | C5XDI6 | 1e-162 | C5XDI6_SORBI; Uncharacterized protein | ||||
STRING | Sb02g007000.1 | 1e-163 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2448 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G36920.2 | 4e-80 | AP2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|