PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462845248
Organism
Eragrostis tef
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family NAC
Protein Properties Length: 659aa    MW: 72227.5 Da    PI: 4.3515
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462845248genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.43.9e-25101332128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgy.Wkatgkdkevlsk..kg 97 
                ppGfrF+Ptdeelv ++Lk+++++ + +    i++vd+yk++P++Lp ++v+++  ++  F +   +      ++r+ ++g+   +tg  +  + +  ++
  462845248  10 PPGFRFSPTDEELVLYFLKRRIASGRPTP--YIADVDVYKSHPSHLPgTRVSTQIASLLRFPRDLMT-----LTHRSSTAGRsALQTGDRQWFFFTrlDR 102
                8*********************9999555..6***************55665555555555444333.....2333333333124677766666555788 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                + vg kktLv+++grap+ge+tdWvm ey++
  462845248 103 RPVGNKKTLVYHHGRAPRGERTDWVMYEYTI 133
                99***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-287156IPR003441NAC domain
PROSITE profilePS5100530.2559156IPR003441NAC domain
PfamPF023659.9E-1410133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
METTPPRRGP PGFRFSPTDE ELVLYFLKRR IASGRPTPYI ADVDVYKSHP SHLPGTRVST  60
QIASLLRFPR DLMTLTHRSS TAGRSALQTG DRQWFFFTRL DRRPVGNKKT LVYHHGRAPR  120
GERTDWVMYE YTILADAFPQ AAGACEAYAL YKLFQKSGAG PKNGEQYGAP FREEDWLDDD  180
EEEQGLSAGA VAHPVATVQQ QADRELPTVD LEELLAEFGS DQDQGEEQFD FATPASSQGQ  240
LHHGHGQGSG AGDKADIGDN STGSGAVPVP ENACADLPLG DIEEFLMRIS DDQQNAELLS  300
DFSSSVPELQ RRCDDHQVWL DADRGDEFCA TNPITGSGSV VTAGYTGAEL PVGDLEGLLL  360
QIANDREMVE PVSDLSTPFP HHNFNQVDIK GFQSPGDPVG TLSCIVQKSQ DFDPQIRPNS  420
QIPESNLTNM PVSAEANSAE ETSMWRASGS MSYNCQDADE FLEINDFFDL DDVGHNMNST  480
ATEHLISATN GMFGNLEYSD APSSLTGHFD TDEVVAENQF VDFGTLNLHT GNEPLNQSSN  540
ASQSWFNAAL SALLDSVPSS PALAAEIENT VINRTFQRIS SFRSQQAANE ESTVIYRTIQ  600
RISSFKSQQD AREEPSTPVI KATRSGRLMF VSVLVLLAGV MWTGPAVNFF KGLWKSSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-181013316140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap462845248
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3624275e-65AK362427.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2005A11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679824.10.0uncharacterized protein LOC101780745 isoform X1
TrEMBLA0A1E5UTD40.0A0A1E5UTD4_9POAL; NAC domain-containing protein 16
STRINGPavir.J04800.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91282840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.21e-36NAC domain containing protein 16