PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029464m
Common NameEUTSA_v10029464mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 259aa    MW: 29953.2 Da    PI: 10.5562
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029464mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.7e-1653105148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48 
                      +g WT+e d+ll++av+++ g++Wk+Ia++++      +R +  c++rw+k+l
  Thhalv10029464m  53 KGGWTPEQDKLLINAVQRYEGKNWKKIAECVPgsweeDKRNDIKCQHRWRKVL 105
                      688**********************************99***********986 PP
2Myb_DNA-binding49.69.4e-16111160148
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+ll ++vk +  +    W++I++ ++ gR +kqc++rw+++l
  Thhalv10029464m 111 KGPWTKEEDDLLSELVKVFLENdkpKWSKISKQLP-GRIGKQCRERWHNHL 160
                      79***************99888899**********.*************97 PP
3Myb_DNA-binding43.76.3e-14168208345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT eE+++lv+a +  G++ W+ Ia+ ++ gRt++++ ++w+
  Thhalv10029464m 168 MWTREEELILVQAQRGQGNK-WAEIAKLLP-GRTENSINNHWN 208
                      5*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5009010.08148105IPR017877Myb-like domain
SuperFamilySSF466894.16E-1750120IPR009057Homeodomain-like
SMARTSM007171.5E-1252107IPR001005SANT/Myb domain
PfamPF002494.4E-1353105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1955117IPR009057Homeodomain-like
CDDcd001677.41E-1056105No hitNo description
PROSITE profilePS5129428.183106164IPR017930Myb domain
SuperFamilySSF466895.14E-26108207IPR009057Homeodomain-like
SMARTSM007174.9E-17110162IPR001005SANT/Myb domain
CDDcd001671.67E-11113160No hitNo description
PfamPF139211.8E-15114174No hitNo description
Gene3DG3DSA:1.10.10.604.3E-24118167IPR009057Homeodomain-like
PROSITE profilePS5129416.475165215IPR017930Myb domain
SMARTSM007171.5E-10165213IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-18168215IPR009057Homeodomain-like
CDDcd001678.57E-8169208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MFVRREKELR KKKITCVQGA RRLDTTACHV LIQSSIRLCR SRRVNGPTRR SSKGGWTPEQ  60
DKLLINAVQR YEGKNWKKIA ECVPGSWEED KRNDIKCQHR WRKVLDPNLN KGPWTKEEDD  120
LLSELVKVFL ENDKPKWSKI SKQLPGRIGK QCRERWHNHL NPNIIKTMWT REEELILVQA  180
QRGQGNKWAE IAKLLPGRTE NSINNHWNCS LKKRLEQFPN STFSGSGPCG SDESNFINQS  240
NIVTSRLLVN QISDVTSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-53522155159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-53522155159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029464m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009898.11e-158transcription factor MYB3R-2
SwissprotQ9SPN31e-109MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLV4MYP90.0V4MYP9_EUTSA; Uncharacterized protein
STRINGXP_006396253.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.21e-113myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]