PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029379m
Common NameEUTSA_v10029379mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARF
Protein Properties Length: 722aa    MW: 81425.1 Da    PI: 6.2478
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029379mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-22126227199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+kvlt sd++++g l++ k++a e+     +++++ s++++ +d++g +W++k+i+r+++ r+++t+GW++F+ +++L +gD+++F   + ++
  Thhalv10029379m 126 FIKVLTASDTSTHGGLSVIKRHAVEClppldMSQPTPSQEIVAKDLHGCEWKFKHIFRGSPLRHIFTTGWSGFATSKRLVTGDSFIFL--RGEN 217
                      99*****************************88888999*************************************************..3488 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      +e +v+++r+
  Thhalv10029379m 218 GESRVGIRRA 227
                      8889***996 PP
2Auxin_resp74.52.9e-25252331183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      a++a++tks+F v+ + r  +s+F+v+++kv++a+++k+ vG+Rf m+fe+ d+  +r+sGt++g +d+++ +W++S+Wr+L+
  Thhalv10029379m 252 AMNAINTKSMFIVFCKLR--SSQFIVNFDKVVDAVNNKFYVGSRFTMRFENYDFTVIRYSGTIIGKKDFSS-HWRDSEWRCLE 331
                      789*********999877..6***********************************************888.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.5E-36118239IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-32124252IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-22125226No hitNo description
PfamPF023621.2E-20126227IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956126228IPR003340B3 DNA binding domain
SMARTSM010191.5E-21126228IPR003340B3 DNA binding domain
PfamPF065079.4E-23252330IPR010525Auxin response factor
PfamPF023094.6E-8476547IPR033389AUX/IAA domain
SuperFamilySSF542777.19E-13509587No hitNo description
PROSITE profilePS5174523.118511592IPR000270PB1 domain
PfamPF023091.1E-5552591IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    Send to blast
MENNQVMDAE YEFPGIDNSR LDYLYDELWK LSAGPLFDLP KFGEKVYYFP QGHIEHLEAH  60
TKDELSQLRP IFDIPSRIGC SVIDIQLKVE NETDEVFAKI ALLPDTAEVE IPISNVNHER  120
IKVSSFIKVL TASDTSTHGG LSVIKRHAVE CLPPLDMSQP TPSQEIVAKD LHGCEWKFKH  180
IFRGSPLRHI FTTGWSGFAT SKRLVTGDSF IFLRGENGES RVGIRRAVHQ QRSIPLSIIS  240
KESMHHGITA TAMNAINTKS MFIVFCKLRS SQFIVNFDKV VDAVNNKFYV GSRFTMRFEN  300
YDFTVIRYSG TIIGKKDFSS HWRDSEWRCL EVQWDEPALI PRPNKVSSWE IEHMGSSSNV  360
HQSALLKNKR SRQAKETSSN LWPPTLTQGQ EIGQSTVNFP MSVPPLSYCD ATDSSNISSG  420
WPIGYSVPTM PKPNYNNEMV MSVKEKMTTA VTTANYRLFG VDLTSPRETE DPIRQIDSYQ  480
KSEMCKITKE KNCDQIQTRA SPKEIQSKST RSRIKVHMQG VAIGRAVDLT ILDGYNQLID  540
ELEKLFDLKD ELHTRNQWEI IFTDDEGDMM LVGDDPWPKF CNMVKKIFIC SKEEVGSQMT  600
CADGIIQVGG SVEGCEGSPV QPQSEAQQIR TEPSSSGGAH QTSPNRAQAA FDPTALMNAF  660
AAQMQELVRS NDAKFATLTA QISNLQQESP IRRRNLISDF QEERDPQCTV ARSVVQQYQQ  720
T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1252235817359Auxin response factor 1
4ldw_A1e-1252235817359Auxin response factor 1
4ldw_B1e-1252235817359Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029379m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010273.10.0putative auxin response factor 14
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLV4KKN90.0V4KKN9_EUTSA; Auxin response factor
STRINGXP_006396992.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14