PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029212m
Common NameEUTSA_v10029212mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 142aa    MW: 15891 Da    PI: 11.6848
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029212mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.32.9e-212778155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s ykGVr+++ +g+++AeIrdp++ng  +r +lg+f t+eeAa a+++a+ kl+g
  Thhalv10029212m 27 SNYKGVRRRP-WGKYAAEIRDPNKNG--ARMWLGTFQTPEEAALAYDRAAFKLRG 78
                     57********.***********8887..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.0E-152778IPR001471AP2/ERF domain
CDDcd000181.31E-322788No hitNo description
SuperFamilySSF541711.83E-242787IPR016177DNA-binding domain
SMARTSM003801.8E-382892IPR001471AP2/ERF domain
PROSITE profilePS5103224.1052886IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-322887IPR001471AP2/ERF domain
PRINTSPR003671.7E-132940IPR001471AP2/ERF domain
PRINTSPR003671.7E-136888IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
AGDKGDSSSY SSVPPPPRTR TRTRRGSNYK GVRRRPWGKY AAEIRDPNKN GARMWLGTFQ  60
TPEEAALAYD RAAFKLRGSK AKLNFPHLIT TEETTCGNKR QRSPEPTSPP PKRRNNTNII  120
NLTTRLPSLG LMLSVFQKHL Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-312593270ATERF1
3gcc_A3e-312593270ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029212m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396194.21e-100ethylene-responsive transcription factor 13
SwissprotQ8L9K11e-36ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLV4L5R74e-99V4L5R7_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006396194.11e-100(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-38ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]