PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029161m
Common NameEUTSA_v10029161mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ARF
Protein Properties Length: 582aa    MW: 65981.2 Da    PI: 5.8967
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029161mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.13e-22121222199
                      EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                      f+kvlt sd++++g l++ k++a e+     +++++ s++++ +d++g +W++k+ +r+++ r+++t+GW+ F+ +++L +gD+++F   + ++
  Thhalv10029161m 121 FIKVLTASDTSTHGGLSVIKRHAVEClppldMSQPTPSQEIVAKDLHGCEWRFKHVFRGSPLRHIFTTGWSAFATSKRLVTGDSFIFL--RGEN 212
                      99*****************************88888999*************************************************..3488 PP

                      E..EEEEE-S CS
               B3  90 felvvkvfrk 99 
                      +e +v+++r+
  Thhalv10029161m 213 GESRVGIRRA 222
                      8889***996 PP
2Auxin_resp33.42e-122633024383
       Auxin_resp  43 mRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                       Rf m+fe  d+  +r+sGtv+g +dl + +W++S+Wr+L+
  Thhalv10029161m 263 PRFTMQFEDYDFTIIRYSGTVIGKKDLCS-HWQDSEWRCLE 302
                      5*************************777.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-36114234IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-31116241IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-22120221No hitNo description
SMARTSM010191.7E-20121223IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956121223IPR003340B3 DNA binding domain
PfamPF023624.1E-20121222IPR003340B3 DNA binding domain
PfamPF065075.2E-8264301IPR010525Auxin response factor
PfamPF023091.1E-6454498IPR033389AUX/IAA domain
SuperFamilySSF542771.96E-12460538No hitNo description
PROSITE profilePS5174522.945462543IPR000270PB1 domain
PfamPF023091.3E-5507543IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MANNQVMDAE YEFPVESYLY DELWKLSAGP LFDLPKFGEK VYYFPQGHIE HVEAHTKDEL  60
SQLRPIFDIP SKIGCNVMDI QLKVENETDE IFAKIALLPD TAEVEIPISN VNHERRKVSS  120
FIKVLTASDT STHGGLSVIK RHAVECLPPL DMSQPTPSQE IVAKDLHGCE WRFKHVFRGS  180
PLRHIFTTGW SAFATSKRLV TGDSFIFLRG ENGESRVGIR RAVHQQRSIP LSIISKEIMH  240
HGITASTMNA INTKSMFIVY CKPRFTMQFE DYDFTIIRYS GTVIGKKDLC SHWQDSEWRC  300
LEVQWDEPAL IPRPNKVSPW EIEHMGSLSN VHQSALLKNK RSNLWNPTLT QGQEIGQSST  360
NFLMTVPQLS YCDATDDSKI PSGLAISYSV PTMSKTNYNN QMVMSMKEKM TTAATTANNR  420
LFGVDLTSPK EIEDPMRQTE ENNCDQIRTQ TSPKEIQSKS TRSRTKVQMQ GVAIGRAVDL  480
TILDGYNQLI DELEKLFDLK DELRTRNQWE IIFTDDEGDM MLVGDDPWPE FCNMVKKMFI  540
CSKEEVKIMK SGKKFLEGDS ALTAAMLTCS DVTPDVKTAN N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1131933019360Auxin response factor 1
4ldw_A1e-1131933019360Auxin response factor 1
4ldw_B1e-1131933019360Auxin response factor 1
4ldx_A1e-1131933019360Auxin response factor 1
4ldx_B1e-1131933019360Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029161m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024010249.10.0putative auxin response factor 14
SwissprotQ9LQE80.0ARFN_ARATH; Putative auxin response factor 14
TrEMBLV4L3X30.0V4L3X3_EUTSA; Auxin response factor
STRINGXP_006396921.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7653631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35540.10.0auxin response factor 14