PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10029148m | ||||||||
Common Name | EUTSA_v10029148mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | GRAS | ||||||||
Protein Properties | Length: 581aa MW: 63932 Da PI: 5.4874 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 324.1 | 2.7e-99 | 210 | 577 | 2 | 374 |
GRAS 2 velLlecAeavss.gdlelaqalLarlsel.aspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 +e+Ll++Ae+++s gd+ laq +Larl+++ +sp g +p++R+a+yf+eAL++ l++ ++ + ++++ ++++ + ++aa+k fse+sP+l Thhalv10029148m 210 TEQLLKAAEVIESgGDTCLAQGILARLNQQlSSPVGgnKPFERAAFYFKEALHNLLLH--NNNNNNNASQTLNPYSLIFKIAAYKSFSEISPVL 301 689*********978999**********99899999778******************9..5566667788888899****************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnv 180 +f+++t Nqa+le+++g r+Hi+Dfdi++G+QW++L+q+L R+ +gpp sl+iT+++sp+s+ ++ el t+++L+++A+e++++++++v Thhalv10029148m 302 QFTNFTSNQALLESFQGFYRLHIVDFDIGYGGQWASLMQELVLRDnnnKGPPlSLKITVFASPASHdDQLELGFTQDNLKHLASEINISLDIQV 395 ********************************************988766777**********99999************************** PP GRAS 181 lvakrledl.eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 l +++ l +++ + + +Ea+aVnl+ + ++ +++s+ + +L++vk+lsP+++v++++ +++++ +F +++l++l+ ++al++sl+a Thhalv10029148m 396 L---SFDLLaSVSWPHSSDKEAVAVNLSAASFS------DMPSHLPLLLRFVKHLSPTIIVCSDRGCERTDLPFPQQLLHSLHSHAALLESLDA 480 9...555552334446777********995554......45777888*********************************************88 PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367 ++ ++ +k+Er+l+++ei+++v+++ + ++ +++W+++l ++GF+pv+ s+++++qa++l+++++++g++ve++++sl+l+W++ +L Thhalv10029148m 481 V-NANLDALQKIERFLIQPEIEKLVSNRSRP---IERPMMTWQAMLLQMGFSPVTHSNFTESQAECLVQRTPVRGFHVEKKHNSLLLCWQRTEL 570 7.5666999*******************999...55667******************************************************* PP GRAS 368 vsvSaWr 374 v vSaWr Thhalv10029148m 571 VGVSAWR 577 ******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.332 | 184 | 557 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.5E-97 | 210 | 577 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MPLPFEEFQG KVISYFSSSF YEKEEELLLL PFSSEPTSVL SPLTTSSSTV SSSHGGHSAV 60 GAAISGDATT DEQCGRMGLP GDWEQALPGD QDQDQSILRL IMGGDSQEDP SLELNNILQT 120 CSSSSSQSPA FHHHSADYTS LGFGLVDTGF GLDHSLFSEE EKPPPPPPPL LIHQSQAHFT 180 QSPAIFYGQH PPPAKRLNQG PPVSKQGVIT EQLLKAAEVI ESGGDTCLAQ GILARLNQQL 240 SSPVGGNKPF ERAAFYFKEA LHNLLLHNNN NNNNASQTLN PYSLIFKIAA YKSFSEISPV 300 LQFTNFTSNQ ALLESFQGFY RLHIVDFDIG YGGQWASLMQ ELVLRDNNNK GPPLSLKITV 360 FASPASHDDQ LELGFTQDNL KHLASEINIS LDIQVLSFDL LASVSWPHSS DKEAVAVNLS 420 AASFSDMPSH LPLLLRFVKH LSPTIIVCSD RGCERTDLPF PQQLLHSLHS HAALLESLDA 480 VNANLDALQK IERFLIQPEI EKLVSNRSRP IERPMMTWQA MLLQMGFSPV THSNFTESQA 540 ECLVQRTPVR GFHVEKKHNS LLLCWQRTEL VGVSAWRCRS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-26 | 234 | 577 | 24 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10029148m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396213.1 | 0.0 | scarecrow-like protein 6 | ||||
Swissprot | O81316 | 0.0 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | V4MYL9 | 0.0 | V4MYL9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396213.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8574 | 27 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10029148m |
Entrez Gene | 18014935 |
Publications ? help Back to Top | |||
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