PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10029132m
Common NameEUTSA_v10029132mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 314aa    MW: 34539.4 Da    PI: 4.7397
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10029132mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.1e-19109158255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +g+W+AeIrdp+    r  r +lg+++taeeAa  +++a+ +l+g
  Thhalv10029132m 109 KFRGVRQRP-WGKWAAEIRDPT----RrVRLWLGTYDTAEEAAIVYDNAAIQLRG 158
                      89*******.**********84....34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.0E-30108166IPR001471AP2/ERF domain
PfamPF008472.1E-12109158IPR001471AP2/ERF domain
PROSITE profilePS5103223.275109166IPR001471AP2/ERF domain
CDDcd000183.63E-31109168No hitNo description
SMARTSM003802.1E-38109172IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-21109167IPR016177DNA-binding domain
PRINTSPR003675.0E-10110121IPR001471AP2/ERF domain
PRINTSPR003675.0E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
METEKKVSLQ RIKLTEHKTN SIVTTAITKP RILRISVTDP YATDSSSEEE DDFAEISRKR  60
RRVKKFVNEV VLESTVSEKE RPKKKTRGKT TKTTAESAAT PVAVTTARKF RGVRQRPWGK  120
WAAEIRDPTR RVRLWLGTYD TAEEAAIVYD NAAIQLRGPH ALTNFSPSPA PEQGEEASTE  180
MAEFTTKSGR ECLDSPVSVL QSPFSGASTS SIMVKEEISG ESTPTTEVKE EQSVNFSDSF  240
TDFSAPLFSD DDVFGFPTPI PDFYGGDLFG DDIFADMSFG FGPGSGSGFS SWHVEDHFQD  300
IGDLFGSDSM LAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19108165159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761RKRRR
25764RKRRRVKK
35862KRRRV
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10029132m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396951.10.0ethylene-responsive transcription factor CRF1
SwissprotO825031e-106CRF1_ARATH; Ethylene-responsive transcription factor CRF1
TrEMBLV4L3Z60.0V4L3Z6_EUTSA; Uncharacterized protein
STRINGXP_006396951.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-101cytokinin response factor 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Raines T, et al.
    The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis.
    Plant J., 2016. 85(1): p. 134-47
    [PMID:26662515]