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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Thhalv10028949m | ||||||||
| Common Name | EUTSA_v10028949mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family | MIKC_MADS | ||||||||
| Protein Properties | Length: 223aa MW: 25487.9 Da PI: 9.4678 | ||||||||
| Description | MIKC_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 96.8 | 9.2e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien + rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
Thhalv10028949m 9 KRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59
79***********************************************96 PP
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| 2 | K-box | 74.7 | 2.5e-25 | 83 | 172 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ ++++ + e L ++ie+L+ ++R+llGe+L+ s++eLqqLe+qL++sl+kiR+kK++ll+e+ie+l++ke++l enk+L++k+e
Thhalv10028949m 83 RDGNSQEGKGETYGLARKIEQLEISKRKLLGEGLDASSIEELQQLENQLDRSLTKIRAKKYQLLREEIEKLKEKERNLIAENKMLKEKYE 172
56678888999999*************************************************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00432 | 1.2E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.071 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.7E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 6.36E-40 | 3 | 72 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 3.79E-32 | 3 | 74 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.3E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.7E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.7E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 1.6E-24 | 86 | 171 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.285 | 87 | 177 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
| GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0005737 | Cellular Component | cytoplasm | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 223 aa Download sequence Send to blast |
MVRGKTEMKR IENATSRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS 60 SSITKTVERY QKRIQDLGSD HKRDGNSQEG KGETYGLARK IEQLEISKRK LLGEGLDASS 120 IEELQQLENQ LDRSLTKIRA KKYQLLREEI EKLKEKERNL IAENKMLKEK YEMERGGTVA 180 RTSPSSSTSE EVDIYDNEIE EVVTDLFIGP PETRHSKKFP PN* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5f28_A | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_B | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_C | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
| 5f28_D | 1e-16 | 1 | 60 | 1 | 60 | MEF2C |
| 6byy_A | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6byy_B | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6byy_C | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6byy_D | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_A | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_B | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_C | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| 6bz1_D | 2e-16 | 1 | 60 | 1 | 60 | MEF2 CHIMERA |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that regulates root development by controlling meristem size and patterning of the root apical meristem. Regulates auxin transport and gradients in the root meristematic cells via direct regulation of the auxin efflux carrier PIN1 and PIN4 gene expression. Binds specifically to the CArG-box DNA sequences in the promoter regions of PIN1 and PIN4 genes (PubMed:24121311). Involved in the regulation of shoot apical meristem (SAM) cell identities and transitions. Promotes flowering transition and participates in flower meristem maintenance and determinacy. Positively regulates TFL1 and WUS expression. Binds directly to the TFL1 regulatory sequences (PubMed:25636918). {ECO:0000269|PubMed:24121311}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Thhalv10028949m |
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:24121311}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AK230464 | 0.0 | AK230464.1 Arabidopsis thaliana mRNA for MADS-box protein AGL14, complete cds, clone: RAFL26-03-G06. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006396837.1 | 1e-160 | agamous-like MADS-box protein AGL14 | ||||
| Refseq | XP_024010047.1 | 1e-160 | agamous-like MADS-box protein AGL14 | ||||
| Swissprot | Q38838 | 1e-120 | AGL14_ARATH; Agamous-like MADS-box protein AGL14 | ||||
| TrEMBL | V4KK92 | 1e-158 | V4KK92_EUTSA; Uncharacterized protein | ||||
| STRING | XP_006396837.1 | 1e-159 | (Eutrema salsugineum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM78 | 28 | 413 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G11880.1 | 1e-116 | AGAMOUS-like 14 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Thhalv10028949m |
| Entrez Gene | 18014628 |
| Publications ? help Back to Top | |||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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