PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028924m | ||||||||
Common Name | EUTSA_v10028924mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | LBD | ||||||||
Protein Properties | Length: 238aa MW: 25638.1 Da PI: 6.3876 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.5 | 2e-37 | 24 | 125 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +e+ +++fa+vhk+FGasn +kll +p ++r da+ +l yeA ar++dPvyG+vg+i++lq+q+++l+ae Thhalv10028924m 24 PCGACKFLRRKCVAECIFAPYFDSEEgTAHFAAVHKVFGASNASKLLFMIPASRRLDAVVTLSYEALARLSDPVYGCVGHIFALQHQVMNLEAE 117 7*********************998879****************************************************************** PP DUF260 94 lallkeel 101 la+++++l Thhalv10028924m 118 LAMVQTQL 125 ***99885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.414 | 23 | 125 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-36 | 24 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MPHQTEYYVS TKKMSGSTIG GASPCGACKF LRRKCVAECI FAPYFDSEEG TAHFAAVHKV 60 FGASNASKLL FMIPASRRLD AVVTLSYEAL ARLSDPVYGC VGHIFALQHQ VMNLEAELAM 120 VQTQLSTLQG LPPPNPQKSS PTEAVSSSNA PLVASVDNNK INNVVSSSLL HVAHGMSQQQ 180 QQQPKDDIEV STESVNFSTL FGLDDPLMDQ GGDLNALARE FFSKYLTEVK LRPSSPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-37 | 17 | 132 | 4 | 123 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-37 | 17 | 132 | 4 | 123 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028924m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396220.1 | 1e-177 | LOB domain-containing protein 31 | ||||
Swissprot | O81322 | 1e-110 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | V4LD24 | 1e-175 | V4LD24_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396220.1 | 1e-176 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00210.1 | 1e-112 | LOB domain-containing protein 31 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028924m |
Entrez Gene | 18014934 |