PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028861m
Common NameEUTSA_v10028861mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 287aa    MW: 31988.2 Da    PI: 8.8488
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028861mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.8e-1854101148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd++lvd+++ +G g+W++ ++  g+ R++k+c++rw +yl
  Thhalv10028861m  54 KGAWTKEEDQRLVDYIRNHGEGCWRSLPKSAGLLRCGKSCRLRWINYL 101
                      79******************************99************97 PP
2Myb_DNA-binding53.94.3e-17107151147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eEd+ +++++ +lG++ W++Ia +++ gRt++++k++w+++
  Thhalv10028861m 107 RGNFSDEEDQVIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 151
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-2445104IPR009057Homeodomain-like
PROSITE profilePS5129416.7649101IPR017930Myb domain
SMARTSM007174.5E-1353103IPR001005SANT/Myb domain
SuperFamilySSF466897.91E-2953148IPR009057Homeodomain-like
PfamPF002494.7E-1654101IPR001005SANT/Myb domain
CDDcd001675.12E-1156101No hitNo description
PROSITE profilePS5129427.965102156IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-27105156IPR009057Homeodomain-like
SMARTSM007174.1E-16106154IPR001005SANT/Myb domain
PfamPF002493.3E-15107151IPR001005SANT/Myb domain
CDDcd001678.45E-12109152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0090378Biological Processseed trichome elongation
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGTNLVKKSP PFILTQTLLT YCVLLLFLSI HTHTHTIFFT MGRSPCCEKA HTNKGAWTKE  60
EDQRLVDYIR NHGEGCWRSL PKSAGLLRCG KSCRLRWINY LRPDLKRGNF SDEEDQVIIK  120
LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSHG IDPQTHRPVK DSVAVTDSKT  180
VPSPLTHAHQ NGAVEYSFSV RPKKEISSDN GASTSGTTTD EDLQQNGDCY YSDDSRDTEL  240
NLELTLGSGS TSWVGSDRVV RAGLSADSKP WRDPVTAVVA ARLSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29541567108B-MYB
1h8a_C2e-295315626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028861m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene, asbscisic acid (ABA), auxin (IAA), and Pseudomonas syringae pv. phaseolica. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU269361e-131U26936.1 Arabidopsis thaliana clone myb6 DNA-binding protein mRNA, complete cds.
GenBankAY0868131e-131AY086813.1 Arabidopsis thaliana clone 28019 mRNA, complete sequence.
GenBankBT0041711e-131BT004171.1 Arabidopsis thaliana clone RAFL15-40-D03 (R20880) putative myb family transcription factor (At4g09460) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006397190.20.0transcription repressor MYB6
SwissprotQ388511e-135MYB6_ARATH; Transcription repressor MYB6
TrEMBLV4LFW20.0V4LFW2_EUTSA; Uncharacterized protein
STRINGXP_006397190.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.11e-138myb domain protein 6