PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028794m
Common NameEUTSA_v10028794mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 331aa    MW: 36685.9 Da    PI: 6.7158
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028794mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.45.9e-28150210259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      dD ++WrKYG+K++ g+++prsYYrCt++   +C+++k+v+rs+ dp+++e+tY+g+H+++
  Thhalv10028794m 150 DDVFSWRKYGRKDILGAKYPRSYYRCTFRntqNCWATKQVQRSDGDPTIFEVTYKGTHTCS 210
                      8**************************998889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081120.828144207IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-27145210IPR003657WRKY domain
SuperFamilySSF1182902.22E-24148210IPR003657WRKY domain
SMARTSM007749.7E-38149211IPR003657WRKY domain
PfamPF031065.5E-25150209IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEMLNQKQKN LLTELFHGLK AAKQLQAQLG AVPSAPPSLS SSSSSCLTTE MKETLLHEIV  60
SSYEKAILMV NGSIQDNPTT EPVELAANLV ATSGKVLESP TSISGSPRSQ EFLDGESKDY  120
YLSYKKRKML PKWTEQVRIS PERGLEGPHD DVFSWRKYGR KDILGAKYPR SYYRCTFRNT  180
QNCWATKQVQ RSDGDPTIFE VTYKGTHTCS QRIPPPEKRE NKPNPTVKNY HNDLLDNLRT  240
NLTVRTNGIE GDGFSFPVTP PFYSYDSING DPGNGGGTFS HVGNSGPSDF TGLISTNTST  300
GSSPVFDVDF QFDPTAEINT CFHTFFHDSI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-171512071874Disease resistance protein RRS1
5w3x_D4e-171512071874Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028794m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4423961e-106AF442396.1 Arabidopsis thaliana WRKY transcription factor 41 (WRKY41) mRNA, complete cds.
GenBankAY1336861e-106AY133686.1 Arabidopsis thaliana clone C103116 (D) unknown protein (At4g11070) mRNA, complete cds.
GenBankBT0011071e-106BT001107.1 Arabidopsis thaliana clone C103116 (A) putative WRKY family transcription factor (At4g11070) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396960.10.0probable WRKY transcription factor 41
SwissprotQ8H0Y81e-155WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLV4LF340.0V4LF34_EUTSA; Uncharacterized protein
STRINGXP_006396960.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-133WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]