PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028783m
Common NameEUTSA_v10028783mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 342aa    MW: 38748.7 Da    PI: 6.9782
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028783mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.34.9e-3132117184
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                      f+kvltpsdv+k++rlv+pk++ae++    + +++++ l +ed++g++W+++++y+++s++yv+tkGW++Fvk+++L+ gD v F++
  Thhalv10028783m  32 FDKVLTPSDVGKLNRLVIPKQHAENYfplAN-NQNGTVLDFEDRNGKTWRFRYSYWNSSQSYVMTKGWSRFVKDKNLENGDAVSFHR 117
                      89*********************999**743.457789***********************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-3828142IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.79E-3030117IPR015300DNA-binding pseudobarrel domain
CDDcd100175.25E-2930117No hitNo description
SMARTSM010198.1E-2332125IPR003340B3 DNA binding domain
PROSITE profilePS5086314.4832140IPR003340B3 DNA binding domain
PfamPF023623.9E-2832117IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MSNSDQELAE IGANGSGNNN NNFNLAFREH MFDKVLTPSD VGKLNRLVIP KQHAENYFPL  60
ANNQNGTVLD FEDRNGKTWR FRYSYWNSSQ SYVMTKGWSR FVKDKNLENG DAVSFHRAYV  120
PDDNEPENRR KLLFIDWRHR ADTNLVHNIT HPIFGSPTYP TASYFPVTEY SMSRYRSFPP  180
LYHNRFQERE VLEYGYGRVV NGGRYYAGTP LDHHHHQWNL GRSEPSLVYD SHPVYPASRV  240
TSSSSSAMLP PFTPSQPPPP EGTVKKVRLF GVDVEESSSS GETRGEMGVV AGYSSSSPVV  300
IRDDDESTWR SPRGEMGASS SSVLQLSDDE DYKRKGKSLQ L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-50251401113B3 domain-containing transcription factor NGA1
5os9_B7e-50251401113B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA3. {ECO:0000269|PubMed:16603651}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00424DAPTransfer from AT4G01500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028783m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396350.20.0B3 domain-containing transcription factor NGA4
SwissprotO825951e-169NGA4_ARATH; B3 domain-containing transcription factor NGA4
TrEMBLV4LDE50.0V4LDE5_EUTSA; Uncharacterized protein
STRINGXP_006396350.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136511527
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.11e-140B3 family protein
Publications ? help Back to Top
  1. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  2. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]