PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028778m
Common NameEUTSA_v10028778mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family MYB
Protein Properties Length: 347aa    MW: 38751.1 Da    PI: 7.6127
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028778mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l+++++++G g+W+++++  g+ R++k+c++rw +yl
  Thhalv10028778m 14 KGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding461.2e-1467110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
  Thhalv10028778m  67 RGAFSPDEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
                      89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-28664IPR009057Homeodomain-like
PROSITE profilePS5129419.476961IPR017930Myb domain
SuperFamilySSF466895.14E-3012108IPR009057Homeodomain-like
SMARTSM007171.1E-131363IPR001005SANT/Myb domain
PfamPF002494.3E-161461IPR001005SANT/Myb domain
CDDcd001672.81E-121761No hitNo description
PROSITE profilePS5129425.70262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.5E-2665116IPR009057Homeodomain-like
SMARTSM007176.6E-1366114IPR001005SANT/Myb domain
PfamPF002499.8E-1467111IPR001005SANT/Myb domain
CDDcd001671.80E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGAF SPDEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRLRG  120
IDPVTHKLLT EIETGTDDKT NPVEKSQQSY LAETEGSSST TTGSTNQNNN NTDHLYTGNF  180
GFQRLSLDTG SRIPTGSDLG IWIPRTGRNH HHHVDISADT VPSAVVLPGS MFSSGLIGST  240
TTYRSSNLGL IELENSFSTG PMITEQQLQE SNYNNSTFFG TGNLNWGLTM EEHPFTIANN  300
SLQNHSNSSL YSEIKSETNF FGTEATNVGM WPCNQLQPQQ HAYGHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00427DAPTransfer from AT4G01680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028778m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3531000.0AK353100.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-20-K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396364.10.0transcription factor MYB61 isoform X1
TrEMBLE4MX530.0E4MX53_EUTHA; mRNA, clone: RTFL01-20-K13
TrEMBLV4L6840.0V4L684_EUTSA; Uncharacterized protein
STRINGXP_006396364.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.10.0myb domain protein 55