PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028744m
Common NameEUTSA_v10028744mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 371aa    MW: 39087.4 Da    PI: 4.5903
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028744mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35551472103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y++++d+ ++elisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF+++ F++g+k ll+
  Thhalv10028744m  55 FLTKTYQLVDDPVYDELISWNEDGSTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNDCFRRGEKILLR 139
                      9*****************************************************************99.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k +
  Thhalv10028744m 140 DIQRRKIS 147
                      *****865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-5751144IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.54E-3452144IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-3752144IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.8E-205578IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3155144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-2093105IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434094118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-20106118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.20.5.1704.2E-4224251No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MPGEQTGETP TVAGVGGGGG GCSAGNSGGS SGCGGGGGGG SGVGGDSQRS IPTPFLTKTY  60
QLVDDPVYDE LISWNEDGST FIVWRPAEFA RDLLPKYFKH NNFSSFVRQL NTYGFRKVVP  120
DRWEFSNDCF RRGEKILLRD IQRRKISQPA MAAAAAAAAA AVAASAVTVA AVPAIAHTVS  180
PSNSGEEQVI SSNSSPAAAA ATTGGAAAVG AVLQRTTSCT TTPELIEENE RLRKENVQLS  240
QELTKLKGLY ANIYSLMANF TTGQADCASL LPEGKPLDLL PERQELSEAM AMASRIETGI  300
GLKLDEDLTP RLFGVSIGVK RARRDEELGA ATEEDDEEIR EGEQGSDVKS EPMEEKNSSN  360
HNGPWLELGK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-275514410110Heat shock factor protein 1
5hdn_A2e-275514410110Heat shock factor protein 1
5hdn_B2e-275514410110Heat shock factor protein 1
5hdn_C2e-275514410110Heat shock factor protein 1
5hdn_D2e-275514410110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13040SGCGGGGGGGS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028744m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396868.10.0heat stress transcription factor B-2b
RefseqXP_024009823.10.0heat stress transcription factor B-2b
SwissprotQ9T0D31e-169HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLV4N0260.0V4N026_EUTSA; Uncharacterized protein
STRINGXP_006396868.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-159HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]