PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028710m
Common NameEUTSA_v10028687mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bHLH
Protein Properties Length: 396aa    MW: 43287 Da    PI: 8.6199
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028710mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.7e-16208253555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k+Lq
  Thhalv10028710m 208 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 253
                      9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-19201264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.815203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13208253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-18208262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.50E-17208257No hitNo description
SMARTSM003537.4E-18209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MSQRVPSWHI DGTPPVTVRS TKAANIPMLD YEVAELTWEN GQLGLHGLGP PRVPAHSKYS  60
TGAGGTLESI VDQATRFPNP KPTDDLVPWF HHRSSRAAMD ALVPEQQSQH VGSCSDGHHM  120
AGKKRARVAP EWSASGSQRL TMDTYGFTST SLDDNSSSGG KPCTKTTTID DHDSVCHSRP  180
QMEEEEGEKQ GGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS  240
MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQHQQQQ FQLSLMSNPM GLGIGMGMPG  300
LGLLDLNSMN RVAAAAATPP NIHANMMPNP FVPITSPSWD ASSSNDTRFQ SPLIPDPMAA  360
FLACSSQPTT MESYSRMAAL YQQMQQQLPP PSNQK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1211216ERKRRD
2212217RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028710m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172290.0AK117229.1 Arabidopsis thaliana At4g00050 mRNA for putative bHLH transcription factor (bHLH016), complete cds, clone: RAFL16-78-C08.
GenBankBT0259710.0BT025971.1 Arabidopsis thaliana At4g00050 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396203.10.0transcription factor UNE10
SwissprotQ8GZ380.0UNE10_ARATH; Transcription factor UNE10
TrEMBLV4MYL20.0V4MYL2_EUTSA; Uncharacterized protein
STRINGXP_006396204.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.11e-169bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]