PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028684m | ||||||||
Common Name | EUTSA_v10028684mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | NAC | ||||||||
Protein Properties | Length: 424aa MW: 47779.2 Da PI: 7.0432 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 131.4 | 6.6e-41 | 6 | 133 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 +G+rF Pt eel+++yLk+k+ gk+ ++++i+e++i+++eP Lp +k+++e+ wyfFs+++ ++a+++ ++r+t+ g+Wk+tgkd+++++ Thhalv10028684m 6 VGYRFCPTGEELINHYLKNKILGKSWLVDDAISEINICSYEPICLPslSKIESEDPVWYFFSPKEYTSAKKNATKRTTRFGFWKSTGKDRKIKD 99 7************************999999***************5448888999************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+ge +g kktLv+++gr+p+g+ t+Wv+hey++ Thhalv10028684m 100 KRGEIIGNKKTLVYHEGRSPNGVGTRWVIHEYEI 133 ********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 43.2 | 4 | 151 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-44 | 5 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.1E-23 | 6 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MEKNLVGYRF CPTGEELINH YLKNKILGKS WLVDDAISEI NICSYEPICL PSLSKIESED 60 PVWYFFSPKE YTSAKKNATK RTTRFGFWKS TGKDRKIKDK RGEIIGNKKT LVYHEGRSPN 120 GVGTRWVIHE YEITCLPLQQ RKYVICKVMY NGEEGGDIFF GNNTNETTSY SLVSDPKAVG 180 SINTVPEVMQ AGQEDVLYVN DLSISMNEQE HLGFNPDTFF SDYNPTLQPQ APDYDDQYIT 240 RLLDFNGGDF EGVISDQELI MMTNNNDHRP RKPLSGIIVD YSSESDAESI SATSYQGTTS 300 PGDSVGSSNK HFPSCSSSDS CKDLQTCVDP SISKKIKKSQ VTVPLKQEVK EGKSKAVDAS 360 IDKKTEKKCW FIVEEAMQRK GKKTPRFIYL VNMILGFILL VALIGTSCRF FTNRQNLNPV 420 MKF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-22 | 7 | 133 | 18 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00426 | DAP | Transfer from AT4G01550 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028684m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396352.1 | 0.0 | NAC domain-containing protein 69 | ||||
Swissprot | Q9M126 | 1e-161 | NAC69_ARATH; NAC domain-containing protein 69 | ||||
TrEMBL | V4KIY8 | 0.0 | V4KIY8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396352.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 1e-163 | NAC domain containing protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028684m |
Entrez Gene | 18015274 |
Publications ? help Back to Top | |||
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