PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028616m
Common NameEUTSA_v10028616mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 488aa    MW: 53640.4 Da    PI: 6.6957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028616mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.2e-31234293159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK+ kg+++pr+YYrCt++ gCpv+k+v+r+aed++++++tYeg+Hnh+
  Thhalv10028616m 234 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMSvGCPVRKQVQRCAEDTTILTTTYEGNHNHP 293
                      58****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-33219295IPR003657WRKY domain
SuperFamilySSF1182908.37E-28227295IPR003657WRKY domain
PROSITE profilePS5081129.252229295IPR003657WRKY domain
SMARTSM007742.1E-37234294IPR003657WRKY domain
PfamPF031061.5E-26235293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEEHTQDRRE IAFLDSGEFL ESTSKDDQPN ESLLEHHHKP SIKEVDFFAA KSQPYNPSYM  60
RTTSIVGSSG FNDELVLVNS SLGTSSDDGD DKTKTQISRL KVELERLHEE NHKLKHLLAE  120
ISESYNDLQS RVLLARQTQV EGHHNHEDIT QAVYSQALQD RRPMDMNNEI PATTLKRRSP  180
DDVDDRDLHR GSSKSPRLDQ NKSTNHEEQQ IPHDQLPFRK ARVSVRARSD ATTVNDGCQW  240
RKYGQKMAKG NPCPRAYYRC TMSVGCPVRK QVQRCAEDTT ILTTTYEGNH NHPLPPSATA  300
MAATTSAAAA MLLSGSTTSN LHQTLSTPSA TSSSPSSFYH NFPYTSTIAT LSASAPFPTI  360
TLDLTNPPRP LQPPPLPPQF LSQYGPTAFL PNANQIRFNI NNHPQLLLPN MLGPQAPPRD  420
MVDTVRAAIA MDPNFTAALA AAISSIIGGG NDNNNNNNNN KVDSKSGGSS NGDSPQLPQS  480
CTTFSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-22221296175WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028616m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396367.10.0probable WRKY transcription factor 47
SwissprotQ9ZSI70.0WRK47_ARATH; Probable WRKY transcription factor 47
TrEMBLV4KJ000.0V4KJ00_EUTSA; Uncharacterized protein
STRINGXP_006396367.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71562743
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.10.0WRKY family protein