PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028586m
Common NameEUTSA_v10028586mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family WRKY
Protein Properties Length: 513aa    MW: 55980.1 Da    PI: 7.0174
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028586mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.6e-30281340259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                      +Dg++WrKYGqK+ kg+++pr+YYrCt+a  +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Thhalv10028586m 281 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAvgRCPVRKQVQRCAEDRSILITTYEGNHNHP 340
                      8****************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-32265342IPR003657WRKY domain
SuperFamilySSF1182902.75E-27273342IPR003657WRKY domain
PROSITE profilePS5081128.219275342IPR003657WRKY domain
SMARTSM007746.4E-35280341IPR003657WRKY domain
PfamPF031064.6E-26281340IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MFRFPVSLGG PHDITKQPQP SDEHHRAVMD EVDFFKSEKR DEQNIITDET HRVHVKRENS  60
RVDDDDDRST GINTGLNLLT ANTGSDGSMV DDGLSVDMEE KRTKCENAQL REELKKAAEE  120
TQRLKEMLSQ TTNNFNSLQM QLVAVMRQQE DHNHHLATTE SKDKANKRHE GPEMVPRQFI  180
DLGLPSADVS SEERTTVRSG SPLLENSSSR QRGKRILERE ESPETESNGW GNPNKVSKHN  240
ASSSNCNGNV NGNVVDQSAA EATMRKARVS VRARCEAPML NDGCQWRKYG QKMAKGNPCP  300
RAYYRCTMAV GRCPVRKQVQ RCAEDRSILI TTYEGNHNHP LPPAAMSMAS TTTAAASMLL  360
SGSTMSSQER LMNPTNLLAR TMLPCSSSMA TISASAPFPT ITLDLTESAS NVNNPTSNNP  420
LMNQSVLPHM MGQALYYSQQ QQSKFSGLQL PSQSLNAGES VSAATAAIAA NPNFAAALAA  480
AITSIINGSN GHQSGNSNSS NNNVTTSNVD RQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21267344176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028586m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ3841100.0FJ384110.1 Brassica napus cultivar Westar WRKY transcription factor 42 (WRKY42) mRNA, WRKY42-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396694.10.0WRKY transcription factor 42
SwissprotQ9XEC30.0WRK42_ARATH; WRKY transcription factor 42
TrEMBLV4L7350.0V4L735_EUTSA; Uncharacterized protein
STRINGXP_006396694.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105728107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.10.0WRKY family protein