PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028459m
Common NameEUTSA_v10028459mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 750aa    MW: 81732.2 Da    PI: 5.6479
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028459mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.3e-2063118156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t+ q++eLe++F+++++p+ ++r+eL++ lgL+  qVk+WFqN+R+++k
  Thhalv10028459m  63 KKRYHRHTQRQIQELESFFKECPHPDDKQRKELSRDLGLEPLQVKFWFQNKRTQMK 118
                      688999***********************************************998 PP
2START217.35.1e-682544741206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                      ela +a++elv++a+a +p+Wv+      e++n++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +     +a t
  Thhalv10028459m 254 ELAVAAMEELVRMAQAVDPLWVSTDnnsiEILNEEEYFRTFPRGIGpkplgLRSEASRESAVVIMNHINLVEILMDVN-QWSCVFSgivsRALT 346
                      57899******************999999**************999********************************.*************** PP

                      EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
            START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                      lev+s+g      galq+m+ae+q++splvp R+ +fvRy++q+++g+w++vdvS+ds +++p    + R +++pSg+li++++ng+skvtw+e
  Thhalv10028459m 347 LEVLSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQHSDGSWAVVDVSLDSLRPNP----ISRTRRRPSGCLIQELPNGYSKVTWIE 436
                      **************************************************************9....69999********************** PP

                      -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      h+++++r++h ++++lv+sgla+gak+wv+tl+rqce+
  Thhalv10028459m 437 HMEVDDRSVHTMYKPLVHSGLAFGAKRWVSTLERQCER 474
                      ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-2444118IPR009057Homeodomain-like
SuperFamilySSF466898.36E-1950120IPR009057Homeodomain-like
PROSITE profilePS5007117.05460120IPR001356Homeobox domain
SMARTSM003892.3E-1861124IPR001356Homeobox domain
PfamPF000461.5E-1763118IPR001356Homeobox domain
CDDcd000862.17E-1863121No hitNo description
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
PROSITE profilePS5084845.701245477IPR002913START domain
SuperFamilySSF559613.64E-36247476No hitNo description
CDDcd088754.87E-125249473No hitNo description
SMARTSM002345.7E-75254474IPR002913START domain
PfamPF018525.1E-57255474IPR002913START domain
Gene3DG3DSA:3.30.530.209.7E-6352473IPR023393START-like domain
SuperFamilySSF559612.34E-25494735No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009913Biological Processepidermal cell differentiation
GO:0048497Biological Processmaintenance of floral organ identity
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MYHPNMFESH HMFDMTPKST SDNDLGITGS REDDFETKSG TEVTTENPSG EELQDPNQRP  60
NKKKRYHRHT QRQIQELESF FKECPHPDDK QRKELSRDLG LEPLQVKFWF QNKRTQMKAQ  120
HERHENQILK SDNDKLRAEN NRYKEALSNA TCPNCGGPAA IGEMSFDEQH LRIENARLRE  180
EIDRISAIAA KYVGKPLGSS FGAPLAIHAP SRSLDLEVGN FGNQAGFVGE MYGTGDILRS  240
VSIPSETDKP MIVELAVAAM EELVRMAQAV DPLWVSTDNN SIEILNEEEY FRTFPRGIGP  300
KPLGLRSEAS RESAVVIMNH INLVEILMDV NQWSCVFSGI VSRALTLEVL STGVAGNYNG  360
ALQVMTAEFQ VPSPLVPTRE NYFVRYCKQH SDGSWAVVDV SLDSLRPNPI SRTRRRPSGC  420
LIQELPNGYS KVTWIEHMEV DDRSVHTMYK PLVHSGLAFG AKRWVSTLER QCERLASSMA  480
SNIPAGDLSV ITSPEGRKSM LKLAERMVMS FCSGVGASTA HAWTTMSSTG SDDVRVMTRK  540
SMDDPGRPPG IVLSAATSFW IPVAPKRVFD FLRDENSRSE WDILSNGGMV QEMAHIANGR  600
EPGNCVSLLR VNSGNSSQSN MLILQESCTD ASGSYVIYAP VDIVAMNVVL SGGDPDYVAL  660
LPSGFAILPD GSVGGGTGDG NQEVVSSSSS SSGSCGSLLT VAFQILVDSV PTAKLSLGSV  720
ATVNSLIKCT VERIKAAVAC DGGGGGGGA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028459m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528680.0AK352868.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-14-J22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024009884.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2
RefseqXP_024009886.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2
RefseqXP_024009887.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2
RefseqXP_024009888.10.0homeobox-leucine zipper protein PROTODERMAL FACTOR 2
SwissprotQ93V990.0PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBLE4MWH10.0E4MWH1_EUTHA; mRNA, clone: RTFL01-14-J22
TrEMBLV4L3970.0V4L397_EUTSA; Uncharacterized protein
STRINGXP_006396656.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49128149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0protodermal factor 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]