PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028440m | ||||||||
Common Name | EUTSA_v10028440mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 796aa MW: 86706.8 Da PI: 5.9358 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.6 | 6.8e-21 | 132 | 187 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k Thhalv10028440m 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187 688999***********************************************999 PP | |||||||
2 | START | 210.5 | 6.4e-66 | 319 | 539 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 ela++a++elvk+a +eep+Wvks +++n++e++++f+++k +ea+++sg+v+ ++ lve+l+d++ +W+e+++ +a+t++v Thhalv10028440m 319 ELALTAMDELVKLAHSEEPLWVKSLdgerDELNEEEYMRTFSSTKPtgLVTEASKISGMVIINSLALVETLMDSN-RWTEMFPcnvaRAATTDV 411 5899*************************************99999999**************************.****************** PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehv 170 is g galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++++ s+ ++R +lpSg++++++sng+skvtwveh+ Thhalv10028440m 412 ISGGmagtrnGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGvSPVIIR--RLPSGCVVQDMSNGYSKVTWVEHA 503 ************************************************************99999999..************************ PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++++h l+r+l++sgl +g ++wvatlqrqce+ Thhalv10028440m 504 EYDENQIHHLYRPLIRSGLGFGSQRWVATLQRQCEC 539 **********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.37E-20 | 119 | 189 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 120 | 189 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.297 | 129 | 189 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.5E-18 | 130 | 193 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.76E-18 | 131 | 189 | No hit | No description |
Pfam | PF00046 | 2.0E-18 | 132 | 187 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 164 | 187 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 43.201 | 310 | 542 | IPR002913 | START domain |
SuperFamily | SSF55961 | 9.23E-30 | 314 | 539 | No hit | No description |
CDD | cd08875 | 1.03E-113 | 314 | 538 | No hit | No description |
Pfam | PF01852 | 7.5E-59 | 319 | 539 | IPR002913 | START domain |
SMART | SM00234 | 3.6E-42 | 319 | 539 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.19E-23 | 558 | 778 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 796 aa Download sequence Send to blast |
MNFGSLFDNT TGGASTGARI LSGLTYGNHT TTSTVIPGGA MAQAAAAASL FSPPITKSVY 60 ASSGLSLALE QPERGINRGE ASMRNNNGGG DNFDGSANRR SREEEHESRS GSDNVEGISG 120 EDQDADDKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ 180 NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPI CTNCGGPAML GDVSLEEHHL 240 RIENARLKDE LDRVCNLTGK FLGHHQHHNS SLELAVGTNN GGDFAFPPDF GGGGGCLPQT 300 QQQQPTGING IDQRSVLLEL ALTAMDELVK LAHSEEPLWV KSLDGERDEL NEEEYMRTFS 360 STKPTGLVTE ASKISGMVII NSLALVETLM DSNRWTEMFP CNVARAATTD VISGGMAGTR 420 NGALQLMNAE LQVLSPLVPV RNVNFLRFCK QHAEGVWAVV DVSIDTVREN SGVSPVIIRR 480 LPSGCVVQDM SNGYSKVTWV EHAEYDENQI HHLYRPLIRS GLGFGSQRWV ATLQRQCECL 540 AILMSSSVTS PDNTSITPGG RKSMLKLAQR MTFNFCSGIS APSVHSWSKL TVGNVDPDVR 600 VMTRKSGEDS GIILSAATSV WLPASPQRLF DFLRNERMRC EWDILSNGGP MQEMVHIAKG 660 QDQGNSVSLL RSNPMNANQS SMLILQETCI DASGALVVYA PVDIPAMNVV MNGGESSYVA 720 LLPSGFAILP DGGIDGGSGD GEQRPVGGGS LLTVAFQILV NNLPTAKLTV ESVETVNNLI 780 SCTVQKIRGA LQCES* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028440m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353253 | 0.0 | AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006396268.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | V4MYR1 | 0.0 | V4MYR1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006396268.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1128 | 27 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028440m |
Entrez Gene | 18015060 |
Publications ? help Back to Top | |||
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