PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028440m
Common NameEUTSA_v10028440mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HD-ZIP
Protein Properties Length: 796aa    MW: 86706.8 Da    PI: 5.9358
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028440mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.8e-21132187156
                      TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      +++ +++t++q++eLe++F+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  Thhalv10028440m 132 KKRYHRHTPQQIQELESMFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 187
                      688999***********************************************999 PP

2START210.56.4e-663195391206
                      HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS...SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
            START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv..dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                      ela++a++elvk+a +eep+Wvks     +++n++e++++f+++k     +ea+++sg+v+ ++  lve+l+d++ +W+e+++    +a+t++v
  Thhalv10028440m 319 ELALTAMDELVKLAHSEEPLWVKSLdgerDELNEEEYMRTFSSTKPtgLVTEASKISGMVIINSLALVETLMDSN-RWTEMFPcnvaRAATTDV 411
                      5899*************************************99999999**************************.****************** PP

                      ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
            START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe.sssvvRaellpSgiliepksnghskvtwvehv 170
                      is g      galqlm+aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++++  s+ ++R  +lpSg++++++sng+skvtwveh+
  Thhalv10028440m 412 ISGGmagtrnGALQLMNAELQVLSPLVPvRNVNFLRFCKQHAEGVWAVVDVSIDTVRENSGvSPVIIR--RLPSGCVVQDMSNGYSKVTWVEHA 503
                      ************************************************************99999999..************************ PP

                      E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
            START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                      +++++++h l+r+l++sgl +g ++wvatlqrqce+
  Thhalv10028440m 504 EYDENQIHHLYRPLIRSGLGFGSQRWVATLQRQCEC 539
                      **********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-20119189IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-22120189IPR009057Homeodomain-like
PROSITE profilePS5007117.297129189IPR001356Homeobox domain
SMARTSM003899.5E-18130193IPR001356Homeobox domain
CDDcd000861.76E-18131189No hitNo description
PfamPF000462.0E-18132187IPR001356Homeobox domain
PROSITE patternPS000270164187IPR017970Homeobox, conserved site
PROSITE profilePS5084843.201310542IPR002913START domain
SuperFamilySSF559619.23E-30314539No hitNo description
CDDcd088751.03E-113314538No hitNo description
PfamPF018527.5E-59319539IPR002913START domain
SMARTSM002343.6E-42319539IPR002913START domain
SuperFamilySSF559611.19E-23558778No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MNFGSLFDNT TGGASTGARI LSGLTYGNHT TTSTVIPGGA MAQAAAAASL FSPPITKSVY  60
ASSGLSLALE QPERGINRGE ASMRNNNGGG DNFDGSANRR SREEEHESRS GSDNVEGISG  120
EDQDADDKPP RKKRYHRHTP QQIQELESMF KECPHPDEKQ RLELSKRLCL ETRQVKFWFQ  180
NRRTQMKTQL ERHENALLRQ ENDKLRAENM SIREAMRNPI CTNCGGPAML GDVSLEEHHL  240
RIENARLKDE LDRVCNLTGK FLGHHQHHNS SLELAVGTNN GGDFAFPPDF GGGGGCLPQT  300
QQQQPTGING IDQRSVLLEL ALTAMDELVK LAHSEEPLWV KSLDGERDEL NEEEYMRTFS  360
STKPTGLVTE ASKISGMVII NSLALVETLM DSNRWTEMFP CNVARAATTD VISGGMAGTR  420
NGALQLMNAE LQVLSPLVPV RNVNFLRFCK QHAEGVWAVV DVSIDTVREN SGVSPVIIRR  480
LPSGCVVQDM SNGYSKVTWV EHAEYDENQI HHLYRPLIRS GLGFGSQRWV ATLQRQCECL  540
AILMSSSVTS PDNTSITPGG RKSMLKLAQR MTFNFCSGIS APSVHSWSKL TVGNVDPDVR  600
VMTRKSGEDS GIILSAATSV WLPASPQRLF DFLRNERMRC EWDILSNGGP MQEMVHIAKG  660
QDQGNSVSLL RSNPMNANQS SMLILQETCI DASGALVVYA PVDIPAMNVV MNGGESSYVA  720
LLPSGFAILP DGGIDGGSGD GEQRPVGGGS LLTVAFQILV NNLPTAKLTV ESVETVNNLI  780
SCTVQKIRGA LQCES*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028440m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532530.0AK353253.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-28-B24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006396268.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLV4MYR10.0V4MYR1_EUTSA; Uncharacterized protein
STRINGXP_006396268.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]