PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10028416m

Common Name

EUTSA_v10028403mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HB-other

Protein Properties

Length: 882aa MW: 97710.3 Da PI: 9.5574

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028416m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.4	3.7e-06	67	123	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ +k Thhalv10028416m 67 KRPRDLLNPKAVKYLQAVFAIKDAISKKESREISALFGITVAQVRDFFVTQKTRVRK 123 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.604	64	124	IPR001356	Homeobox domain
SMART	SM00389	1.5E-4	66	128	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-5	67	126	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.27E-6	67	129	IPR009057	Homeodomain-like
CDD	cd00086	8.00E-4	67	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 882 aa Download sequence Send to blast
MDDAFKEEIE IGSSVESLME LLDSQKELFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA 60 LSIKIGKRPR DLLNPKAVKY LQAVFAIKDA ISKKESREIS ALFGITVAQV RDFFVTQKTR 120 VRKQVRLSRE KVIMSSTNDA LQDNGVPENN TRTHVDPVPL NSTYPEASSI SCGEGQVKLM 180 EWIMQIQDSS ALIWFLSKGG VLILTTWLSQ AAIEEQTSVL LLILKVLCHL PLHKASPENM 240 SAILQSVNGL RFYRIPGISN RAKGLLSRWT KLFAKIQAMK KQKCNSSQID SQSQMLLKQS 300 IAEIMGDNSN PEDILSLSNG RSENVRNLKS SQGPKLLLTS ADDSTKKHML GSTPSYNKER 360 RKVQMVEQPG QKAAGRSPQT VRIGTSSRSR PMSADDIQKA KMRALYMHGK NSKKDPLPSA 420 IGDSRTVVPE KPLALESAKD SPLSQCTEAK AEDTPEPSAV QPVNSPAVNV PVQADEFRKP 480 STPPKSISSK VGVLLKMSPQ TILKNCKRKQ IDWHVPPGME LDEVWRVAAG GNSKEADVQK 540 NRNRREKETT YQSLQAIPLN PKEPWDREMD FDDSLTPEIP TQQPPEESIT EPQDSLDERR 600 TAAGAATTSS SRSSSMEPDF ELLAALLKNP DLLYALTSGK PGSLAGQDMV KLLDVIKNGA 660 PNSSCSSNYK VEEKVEVSLP SPTPSTNPGM SGWGQEVIRN PFSRQNQVGA AVARLSTQLP 720 VASMQWQSSN EQLITRHAPS AYNSLTLPHT ERQQLHQQQS MQPRLHQSQH LQQQQQQPIS 780 TTSYAVRESI GQMGTANSVS WRSQQSQNSY YPHRANGIGS ASSYQGNEQP YICSSSNPGF 840 ESWSPDHSPT RNHPNMRGQQ QPTRKYDSSS HPYWNQNKRW R*

Sequence ? help Back to Top

Protein Sequence Length: 882 aa Download sequence Send to blast

MDDAFKEEIE IGSSVESLME LLDSQKELFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA  60
LSIKIGKRPR DLLNPKAVKY LQAVFAIKDA ISKKESREIS ALFGITVAQV RDFFVTQKTR  120
VRKQVRLSRE KVIMSSTNDA LQDNGVPENN TRTHVDPVPL NSTYPEASSI SCGEGQVKLM  180
EWIMQIQDSS ALIWFLSKGG VLILTTWLSQ AAIEEQTSVL LLILKVLCHL PLHKASPENM  240
SAILQSVNGL RFYRIPGISN RAKGLLSRWT KLFAKIQAMK KQKCNSSQID SQSQMLLKQS  300
IAEIMGDNSN PEDILSLSNG RSENVRNLKS SQGPKLLLTS ADDSTKKHML GSTPSYNKER  360
RKVQMVEQPG QKAAGRSPQT VRIGTSSRSR PMSADDIQKA KMRALYMHGK NSKKDPLPSA  420
IGDSRTVVPE KPLALESAKD SPLSQCTEAK AEDTPEPSAV QPVNSPAVNV PVQADEFRKP  480
STPPKSISSK VGVLLKMSPQ TILKNCKRKQ IDWHVPPGME LDEVWRVAAG GNSKEADVQK  540
NRNRREKETT YQSLQAIPLN PKEPWDREMD FDDSLTPEIP TQQPPEESIT EPQDSLDERR  600
TAAGAATTSS SRSSSMEPDF ELLAALLKNP DLLYALTSGK PGSLAGQDMV KLLDVIKNGA  660
PNSSCSSNYK VEEKVEVSLP SPTPSTNPGM SGWGQEVIRN PFSRQNQVGA AVARLSTQLP  720
VASMQWQSSN EQLITRHAPS AYNSLTLPHT ERQQLHQQQS MQPRLHQSQH LQQQQQQPIS  780
TTSYAVRESI GQMGTANSVS WRSQQSQNSY YPHRANGIGS ASSYQGNEQP YICSSSNPGF  840
ESWSPDHSPT RNHPNMRGQQ QPTRKYDSSS HPYWNQNKRW R*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028416m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396467.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	V4L2M0	0.0	V4L2M0_EUTSA; Uncharacterized protein
STRING	XP_006396467.1	0.0	(Eutrema salsugineum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Thhalv10028416m
Entrez Gene	18015076

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]