PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10028403m

Common Name

EUTSA_v10028403mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

HB-other

Protein Properties

Length: 920aa MW: 102023 Da PI: 9.0063

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028403m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.3	3.9e-06	67	123	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ L+++F+ + +s++e +e+++ g+t +qV+ +F ++++ +k Thhalv10028403m 67 KRPRDLLNPKAVKYLQAVFAIKDAISKKESREISALFGITVAQVRDFFVTQKTRVRK 123 799*********************************************999999886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.604	64	124	IPR001356	Homeobox domain
SMART	SM00389	1.5E-4	66	128	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.7E-6	67	129	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-5	67	126	IPR009057	Homeodomain-like
CDD	cd00086	7.27E-4	67	124	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MDDAFKEEIE IGSSVESLME LLDSQKELFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA 60 LSIKIGKRPR DLLNPKAVKY LQAVFAIKDA ISKKESREIS ALFGITVAQV RDFFVTQKTR 120 VRKQVRLSRE KVIMSSTNDA LQDNGVPENN TRTHVDPVPL NSTYPEASSI SCGEGETVAL 180 MPPDDIPPDL SDSEKYFVEN IFSLLRKEET FSGQVKLMEW IMQIQDSSAL IWFLSKGGVL 240 ILTTWLSQAA IEEQTSVLLL ILKVLCHLPL HKASPENMSA ILQSVNGLRF YRIPGISNRA 300 KGLLSRWTKL FAKIQAMKKQ KCNSSQIDSQ SQMLLKQSIA EIMGDNSNPE DILSLSNGRS 360 ENVRNLKSSQ GPKLLLTSAD DSTKKHMLGS TPSYNKERRK VQMVEQPGQK AAGRSPQTVR 420 IGTSSRSRPM SADDIQKAKM RALYMHGKNS KKDPLPSAIG DSRTVVPEKP LALESAKDSP 480 LSQCTEAKAE DTPEPSAVQP VNSPAVNVPV QADEFRKPST PPKSISSKVG VLLKMSPQTI 540 LKNCKRKQID WHVPPGMELD EVWRVAAGGN SKEADVQKNR NRREKETTYQ SLQAIPLNPK 600 EPWDREMDFD DSLTPEIPTQ QPPEESITEP QDSLDERRTA AGAATTSSSR SSSMEPDFEL 660 LAALLKNPDL LYALTSGKPG SLAGQDMVKL LDVIKNGAPN SSCSSNYKVE EKVEVSLPSP 720 TPSTNPGMSG WGQEVIRNPF SRQNQVGAAV ARLSTQLPVA SMQWQSSNEQ LITRHAPSAY 780 NSLTLPHTER QQLHQQQSMQ PRLHQSQHLQ QQQQQPISTT SYAVRESIGQ MGTANSVSWR 840 SQQSQNSYYP HRANGIGSAS SYQGNEQPYI CSSSNPGFES WSPDHSPTRN HPNMRGQQQP 900 TRKYDSSSHP YWNQNKRWR*

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MDDAFKEEIE IGSSVESLME LLDSQKELFH SQIDQLQDVV VTQCKLTGVN PLAQEMAAGA  60
LSIKIGKRPR DLLNPKAVKY LQAVFAIKDA ISKKESREIS ALFGITVAQV RDFFVTQKTR  120
VRKQVRLSRE KVIMSSTNDA LQDNGVPENN TRTHVDPVPL NSTYPEASSI SCGEGETVAL  180
MPPDDIPPDL SDSEKYFVEN IFSLLRKEET FSGQVKLMEW IMQIQDSSAL IWFLSKGGVL  240
ILTTWLSQAA IEEQTSVLLL ILKVLCHLPL HKASPENMSA ILQSVNGLRF YRIPGISNRA  300
KGLLSRWTKL FAKIQAMKKQ KCNSSQIDSQ SQMLLKQSIA EIMGDNSNPE DILSLSNGRS  360
ENVRNLKSSQ GPKLLLTSAD DSTKKHMLGS TPSYNKERRK VQMVEQPGQK AAGRSPQTVR  420
IGTSSRSRPM SADDIQKAKM RALYMHGKNS KKDPLPSAIG DSRTVVPEKP LALESAKDSP  480
LSQCTEAKAE DTPEPSAVQP VNSPAVNVPV QADEFRKPST PPKSISSKVG VLLKMSPQTI  540
LKNCKRKQID WHVPPGMELD EVWRVAAGGN SKEADVQKNR NRREKETTYQ SLQAIPLNPK  600
EPWDREMDFD DSLTPEIPTQ QPPEESITEP QDSLDERRTA AGAATTSSSR SSSMEPDFEL  660
LAALLKNPDL LYALTSGKPG SLAGQDMVKL LDVIKNGAPN SSCSSNYKVE EKVEVSLPSP  720
TPSTNPGMSG WGQEVIRNPF SRQNQVGAAV ARLSTQLPVA SMQWQSSNEQ LITRHAPSAY  780
NSLTLPHTER QQLHQQQSMQ PRLHQSQHLQ QQQQQPISTT SYAVRESIGQ MGTANSVSWR  840
SQQSQNSYYP HRANGIGSAS SYQGNEQPYI CSSSNPGFES WSPDHSPTRN HPNMRGQQQP  900
TRKYDSSSHP YWNQNKRWR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028403m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK226746	0.0	AK226746.1 Arabidopsis thaliana mRNA for luminidependens protein, complete cds, clone: RAFL07-75-C15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006396467.1	0.0	homeobox protein LUMINIDEPENDENS
Swissprot	Q38796	0.0	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	V4KJ89	0.0	V4KJ89_EUTSA; Uncharacterized protein
STRING	XP_006396467.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10876	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	0.0	HB-other family protein

Link Out ? help Back to Top
Phytozome	Thhalv10028403m
Entrez Gene	18015076

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]