PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028282m | ||||||||
Common Name | EUTSA_v10028282mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 390aa MW: 44174.1 Da PI: 5.3733 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 73.8 | 1.4e-23 | 15 | 63 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++ ++s + ++ ++R+++i+KKA+ELS+LCd+ev+vi ++++g+l++++ Thhalv10028282m 15 SSTSNSLAATSMTNRLETIFKKAYELSTLCDVEVCVIHYGPDGELKTWP 63 67788999****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 0.0019 | 13 | 65 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.00E-16 | 23 | 90 | No hit | No description |
Pfam | PF00319 | 4.8E-14 | 24 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.017 | 24 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.71E-16 | 25 | 98 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MRSSPSFSCS SSSSSSTSNS LAATSMTNRL ETIFKKAYEL STLCDVEVCV IHYGPDGELK 60 TWPEDRQKVR DIAGRFSQLD EAKRRKKSVD LYGFLEKNKT KMTNLTKKTK RDELKYPISD 120 HYSPDQISQL IQSLELSYSK LQERLRFLET QNQKKTNLED HKGLSRPMSL NHQDHHQTQS 180 LNPSKFSLVI YNHEDALLSQ IPLSASTFNH SVPTQFTNYT GDYSMNQELY GCDQNMFMVQ 240 ESVSIYGLNQ LMQHELNGYD QNMCMSDITK GNYFQHPFVS NTQDYSSASQ EFANNYGLNQ 300 LMPKELHSYD QNMCMNDITN SNVQDPCLSS TVSDAVCSDF QDPYGSMVGN TSFSQDLSDM 360 FSSYDVQCAN TSSLLQTSTL PSLYTIPNC* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028282m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024014365.1 | 0.0 | agamous-like MADS-box protein AGL75 | ||||
Swissprot | Q9FLL0 | 5e-93 | AGL75_ARATH; Agamous-like MADS-box protein AGL75 | ||||
TrEMBL | V4LT96 | 0.0 | V4LT96_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405556.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41200.1 | 1e-94 | AGAMOUS-like 75 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028282m |
Entrez Gene | 18022478 |
Publications ? help Back to Top | |||
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