PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028255m | ||||||||
Common Name | EUTSA_v10028255mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 245aa MW: 28495.5 Da PI: 8.1571 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 60.1 | 2.6e-19 | 17 | 62 | 4 | 49 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e sn qvtfskR+ g +KKA+EL++LC++e v++fs++ k++ + Thhalv10028255m 17 EKASNLQVTFSKRKYGFFKKASELCTLCGVEMGVVVFSPSRKMFYF 62 67899************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.1E-24 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 21.516 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.62E-23 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-21 | 15 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-14 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MARVYRGRRK LPMVKMEKAS NLQVTFSKRK YGFFKKASEL CTLCGVEMGV VVFSPSRKMF 60 YFGNPDIKSV INRFENYLHG PYMCFEDGPN TTIQDLNSQL TQELAKLKVE KERKKFLDKI 120 RNKREEIEKW WENPPNQLDL PQTTCLISVL ENLRMELETQ PSQPSQAIVP QNCYGGSYNN 180 IVGGGNIDLF DQGRMFDVNA LNYDPNMVIP NYGPMFGYSD NYNVFDVFDP RYNMNWPEYN 240 QSQY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028255m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405949.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | V4LXZ7 | 0.0 | V4LXZ7_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405949.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16574 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-66 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028255m |
Entrez Gene | 18022872 |