PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thhalv10028239m

Common Name

EUTSA_v10028239mg

Organism

Eutrema salsugineum

Taxonomic ID

72664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema

Family

bHLH

Protein Properties

Length: 298aa MW: 32543 Da PI: 6.7958

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thhalv10028239m	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	213	254	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Thhalv10028239m 213 AKNRRERISERLKVLQELVPNG-----TKVDLVTMLEKAIGYVKFLQ 254 69****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	4.0E-12	204	262	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.983	204	253	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-13	206	264	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.13E-11	206	258	No hit	No description
SMART	SM00353	3.5E-11	210	259	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-6	213	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MALVHDHLNE PYISKPNSSE DLSSPENYRL DQTEVAYAGG EGGGSASSSS TMNSDHQQNQ 60 GFLFYPSSET NEDHNSLMDF NTSSFLSFDH HRSFIPPASV LDGNMSYDYT GWSHSQFDSI 120 SPRVMKTPNC LETTGIFGLP KPATNHGKGD WLYSDSTIVN TGSRHECANP KSAGNKRPCT 180 GENTQPSKKP SNGMNGKAKK ATTSPKDPQS LAAKNRRERI SERLKVLQEL VPNGTKVDLV 240 TMLEKAIGYV KFLQLQVKVL AADEFWPAQG GKAPDISQVK EAIDVILSSS QRDRNSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Thhalv10028239m

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006405832.1	0.0	putative transcription factor bHLH086
Swissprot	Q9FJ00	1e-157	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	V4LA28	0.0	V4LA28_EUTSA; Uncharacterized protein
STRING	XP_006405832.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	1e-158	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	Thhalv10028239m
Entrez Gene	18022574

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]