PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028184m
Common NameEUTSA_v10028184mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family M-type_MADS
Protein Properties Length: 336aa    MW: 37783.1 Da    PI: 7.9528
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028184mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF73.71.5e-233078250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     ++ ++s + ++ +kR+ +i+KKA+ELS+LCd+ev+vi ++++g+l++++
  Thhalv10028184m 30 SSASNSLAATSMTKRLDTIFKKAYELSTLCDVEVCVIHYGPDGELKTWP 78
                     6788999*****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.5E-61380IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.7883981IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.75E-1739113IPR002100Transcription factor, MADS-box
PfamPF003194.6E-153977IPR002100Transcription factor, MADS-box
CDDcd002662.59E-1742105No hitNo description
PRINTSPR004041.5E-54358IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-55879IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MRSSPSSSCF SSSSSSKITM RSSPPSSCSS SASNSLAATS MTKRLDTIFK KAYELSTLCD  60
VEVCVIHYGP DGELKTWPED RQKVRDIAQR YSQLDEDKRR KKSVDLYGFL EKNKTKMANL  120
TKKTKRDELK YPISDHYSPD QISQLIQSLE LNYSKLQERL RFLEAQNQKK TNLEDHRGLR  180
TRPMSLNHQD HHQTQSLNPS KFSLLIYNHE DATLSQIPLS ASTLNQLTSY TGDYSAVQES  240
RLKNQELYGC DQNMSMGNIS SKDFPHPCVS NTQGYSTVQG FANHYGLNNL MRQEPNGGDQ  300
NMCMSGGSTS NNVQDPCLSN TIPLITNCYD YEAIT*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028184m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014589.10.0agamous-like MADS-box protein AGL75
SwissprotQ9FLL02e-95AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBLV4M4520.0V4M452_EUTSA; Uncharacterized protein
STRINGXP_006405555.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41200.16e-95AGAMOUS-like 75
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]