PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028155m | ||||||||
Common Name | EUTSA_v10028155mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 29478.2 Da PI: 10.2933 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.2 | 2.8e-16 | 21 | 66 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+ +G+ +W+ Ia++m+ gRt+k+c++rw++ Thhalv10028155m 21 RGHWKPSEDFKLQELVAVFGPQNWNHIAEKMQ-GRTGKSCRLRWFNQ 66 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 56.9 | 4.8e-18 | 73 | 117 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++++ eE+e+l+ a++++G++ W++Ia+ ++ gRt++ +k++w+ + Thhalv10028155m 73 KKAFSDEEEEKLLAAHREFGNK-WSLIAKLFP-GRTDNAVKNHWHVL 117 679*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.371 | 16 | 67 | IPR017930 | Myb domain |
SMART | SM00717 | 6.1E-13 | 20 | 69 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 21 | 66 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.27E-28 | 21 | 118 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 22 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.32E-11 | 24 | 65 | No hit | No description |
PROSITE profile | PS51294 | 26.816 | 68 | 122 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 72 | 120 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 73 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.12E-11 | 75 | 118 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 75 | 122 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MHQESKNKKK KKQSFSKVCS RGHWKPSEDF KLQELVAVFG PQNWNHIAEK MQGRTGKSCR 60 LRWFNQLDPR INKKAFSDEE EEKLLAAHRE FGNKWSLIAK LFPGRTDNAV KNHWHVLMAR 120 KLRKQSSSYS RSRKRHTPSP DVITSLNLQQ TFNLFPGSVS EESTEFKNYS WKMLKEETTN 180 HKAQEDYCSS HHHHHFSTFP ADSLALLTPH VSISQPSSSS PSSSLSSSEA ENTMVARYYE 240 ITKPPRFIDF LGVGAS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-31 | 21 | 122 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 3e-31 | 20 | 122 | 26 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-31 | 21 | 122 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-31 | 21 | 122 | 4 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028155m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405602.2 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB54 | ||||
Swissprot | Q9SEZ4 | 4e-64 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | V4L9I9 | 0.0 | V4L9I9_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405602.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6300 | 18 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G29020.2 | 1e-87 | myb domain protein 110 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028155m |
Entrez Gene | 18022533 |
Publications ? help Back to Top | |||
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