PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028098m
Common NameEUTSA_v10028098mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ZF-HD
Protein Properties Length: 321aa    MW: 34223.9 Da    PI: 8.6204
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028098mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.44.2e-3448104459
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      ++YkeClkNhAa+lGgha+DGCgEfmps+++  +++++lkCaACgCHRnFHRre+++
  Thhalv10028098m  48 FTYKECLKNHAAALGGHALDGCGEFMPSPSSIsTDPTSLKCAACGCHRNFHRREPDN 104
                      68**************************9999899*******************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015663.4E-3249101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.5E-2849102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.69950101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1150105IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-28179248IPR009057Homeodomain-like
SuperFamilySSF466894.18E-17179248IPR009057Homeodomain-like
TIGRFAMsTIGR015651.5E-24187244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDMTLTTTTT TIPKSPEPES ETPTRIQPAK PISFSNGIIK RHHHPLLFTY KECLKNHAAA  60
LGGHALDGCG EFMPSPSSIS TDPTSLKCAA CGCHRNFHRR EPDNDSSSIP PPSSVAAAIE  120
YQPHHRHHPP PPPQPPQSAP PPPPRSPNSA SPPPISSSYM LLSLSGNNNN NLSFADLNFS  180
GHQIGSRKRF RTKFSQFQKE KMHEFADRVG WKMQKRDEDD VRDFCRQIGV DKSVLKVWMH  240
NNKNTFNRRD LPFSVAGAAV AKIDNGGGGG NHAPIPAGET NNNEFHQSVS SGGGGFDSDS  300
GGGGGGGGGH GGNVNGSSSS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A8e-201862451675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00536DAPTransfer from AT5G39760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028098m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3534320.0AK353432.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-43-G18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405598.10.0zinc-finger homeodomain protein 10
SwissprotQ9FIW91e-101ZHD10_ARATH; Zinc-finger homeodomain protein 10
TrEMBLE4MY350.0E4MY35_EUTHA; mRNA, clone: RTFL01-43-G18
TrEMBLV4NL040.0V4NL04_EUTSA; Uncharacterized protein
STRINGXP_006405598.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39760.16e-48homeobox protein 23
Publications ? help Back to Top
  1. Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
    Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
    Plant Signal Behav, 2014. 9(3): p. e28211
    [PMID:24614501]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Kazama D, et al.
    Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
    Plants (Basel), 2013. 2(4): p. 769-85
    [PMID:27137403]