PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028098m | ||||||||
Common Name | EUTSA_v10028098mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ZF-HD | ||||||||
Protein Properties | Length: 321aa MW: 34223.9 Da PI: 8.6204 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 108.4 | 4.2e-34 | 48 | 104 | 4 | 59 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 ++YkeClkNhAa+lGgha+DGCgEfmps+++ +++++lkCaACgCHRnFHRre+++ Thhalv10028098m 48 FTYKECLKNHAAALGGHALDGCGEFMPSPSSIsTDPTSLKCAACGCHRNFHRREPDN 104 68**************************9999899*******************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 3.4E-32 | 49 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.5E-28 | 49 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.699 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-11 | 50 | 105 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-28 | 179 | 248 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-17 | 179 | 248 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.5E-24 | 187 | 244 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MDMTLTTTTT TIPKSPEPES ETPTRIQPAK PISFSNGIIK RHHHPLLFTY KECLKNHAAA 60 LGGHALDGCG EFMPSPSSIS TDPTSLKCAA CGCHRNFHRR EPDNDSSSIP PPSSVAAAIE 120 YQPHHRHHPP PPPQPPQSAP PPPPRSPNSA SPPPISSSYM LLSLSGNNNN NLSFADLNFS 180 GHQIGSRKRF RTKFSQFQKE KMHEFADRVG WKMQKRDEDD VRDFCRQIGV DKSVLKVWMH 240 NNKNTFNRRD LPFSVAGAAV AKIDNGGGGG NHAPIPAGET NNNEFHQSVS SGGGGFDSDS 300 GGGGGGGGGH GGNVNGSSSS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 8e-20 | 186 | 245 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. Probably involved in establishing polarity during leaf development through the gibberellic acid (GA) signaling pathway. {ECO:0000269|PubMed:17387478}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00536 | DAP | Transfer from AT5G39760 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028098m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By gibberellic acid (GA). {ECO:0000269|PubMed:17387478}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353432 | 0.0 | AK353432.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-43-G18. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405598.1 | 0.0 | zinc-finger homeodomain protein 10 | ||||
Swissprot | Q9FIW9 | 1e-101 | ZHD10_ARATH; Zinc-finger homeodomain protein 10 | ||||
TrEMBL | E4MY35 | 0.0 | E4MY35_EUTHA; mRNA, clone: RTFL01-43-G18 | ||||
TrEMBL | V4NL04 | 0.0 | V4NL04_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405598.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2220 | 25 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39760.1 | 6e-48 | homeobox protein 23 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028098m |
Entrez Gene | 18022529 |
Publications ? help Back to Top | |||
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