PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10028081m
Common NameEUTSA_v10028081mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NF-YC
Protein Properties Length: 219aa    MW: 24886.8 Da    PI: 8.0223
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10028081mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC134.24e-4256156298
            NF-YC   2 lksfwekqiekatdfk....nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdf 91 
                      lk+fw++q++++++f     +++lP++r+kkilk+d+ v+mis eaP+l+skace++ileltlr+w+h+++++r+t++++di++a+++++++ f
  Thhalv10028081m  56 LKVFWASQRDETANFTgfnrQNHLPVSRVKKILKSDPRVTMISKEAPALFSKACEYLILELTLRAWMHTQSCSRQTIQRCDIFQAIKNSETYGF 149
                      89******999999865545789*********************************************************************** PP

            NF-YC  92 lvdivpr 98 
                      l+  vp 
  Thhalv10028081m 150 LIHLVPF 156
                      ***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.0E-2560156IPR009072Histone-fold
PfamPF008082.3E-1578141IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.4E-2879155IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MKRPIMANSS LFLDATDKAS RIRMEPVAPY SHNKMSMPYH LATSKIEGFS SLEAVLKVFW  60
ASQRDETANF TGFNRQNHLP VSRVKKILKS DPRVTMISKE APALFSKACE YLILELTLRA  120
WMHTQSCSRQ TIQRCDIFQA IKNSETYGFL IHLVPFGMHC AIHQGVIEHE KPEKVLPPAE  180
MFLPDMNIPI DMNEVEQENL IAEPSINHKG FDLNSISR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-247715540118HapE
4g92_C2e-247715540118HapE
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10028081m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405799.21e-163nuclear transcription factor Y subunit C-10 isoform X2
SwissprotQ58CM81e-85NFYCA_ARATH; Nuclear transcription factor Y subunit C-10
TrEMBLV4LXI01e-163V4LXI0_EUTSA; Uncharacterized protein
STRINGXP_006405799.11e-163(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM164221112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38140.16e-88nuclear factor Y, subunit C12
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]