PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028027m | ||||||||
Common Name | EUTSA_v10028027mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HSF | ||||||||
Protein Properties | Length: 134aa MW: 15381 Da PI: 10.6459 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 55.4 | 1.6e-17 | 11 | 104 | 1 | 101 |
HHHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHST.T--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 1 aFlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFk.hsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 +F +ly+i++d++ + +isws+++nsf+v+d e++ ++L+k + +n+ F+ +L+ YgFkkv + e+ h+ F +g+ +l Thhalv10028027m 11 TFYIRLYQIVDDPSSDAIISWSKSNNSFIVWDLENLFGEILSKSVEfGRNLLQFISKLQSYGFKKVMGADP--------LEYGHDGFVRGQPQL 96 5899****************************9999999**996652468999**************9996........6************** PP XXXXXXXX CS HSF_DNA-bind 94 lekikrkk 101 l+k+ + + Thhalv10028027m 97 LKKVWMDR 104 **986554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.6E-20 | 7 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 4.62E-20 | 7 | 99 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.1E-22 | 8 | 103 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-16 | 12 | 100 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-8 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 3.9E-8 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
MVHSFPSGLP TFYIRLYQIV DDPSSDAIIS WSKSNNSFIV WDLENLFGEI LSKSVEFGRN 60 LLQFISKLQS YGFKKVMGAD PLEYGHDGFV RGQPQLLKKV WMDRKKRLAP KRAKAKVRKA 120 RAKVEHLLQD LRI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-17 | 6 | 100 | 14 | 117 | Heat shock factor protein 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028027m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010428835.1 | 1e-34 | PREDICTED: heat stress transcription factor A-4a-like | ||||
TrEMBL | V4M463 | 1e-92 | V4M463_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405570.1 | 2e-93 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 2e-29 | Winged helix-turn-helix transcription repressor DNA-binding |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028027m |
Entrez Gene | 18022490 |