PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10028026m | ||||||||
Common Name | EUTSA_v10028026mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | HSF | ||||||||
Protein Properties | Length: 145aa MW: 17228.9 Da PI: 10.2661 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 45.4 | 2.2e-14 | 12 | 95 | 2 | 95 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT.--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkh.snfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 F +kly+i++d++++++isw +n+nsf+v+d e f +++Lp + + + f+ F L + gF+++ + eF h+ F +g ell Thhalv10028026m 12 FYTKLYQIVDDPSFNRIISWGKNNNSFIVWDVEGFRRRILPMFAEFgRDFSKFESELFIHGFRRIGQY-----------EFGHEDFVRGVPELLM 95 99**************************************986554257999**********998764...........5777777777766654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 6.4E-19 | 6 | 95 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 3.0E-16 | 8 | 101 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.63E-19 | 10 | 94 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.2E-5 | 12 | 35 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 4.6E-15 | 12 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.2E-5 | 64 | 76 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MFQRFPNESS SFYTKLYQIV DDPSFNRIIS WGKNNNSFIV WDVEGFRRRI LPMFAEFGRD 60 FSKFESELFI HGFRRIGQYE FGHEDFVRGV PELLMKKMSV KSRTEGMEKF EAKLKPRRII 120 FKPKKAIAKE EVAKVEDLFQ QLQI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10028026m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405569.1 | 1e-101 | heat stress transcription factor C-1a | ||||
TrEMBL | V4LWY8 | 1e-100 | V4LWY8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405569.1 | 1e-100 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3839 | 14 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77570.1 | 4e-27 | Winged helix-turn-helix transcription repressor DNA-binding |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10028026m |
Entrez Gene | 18022489 |