PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10027930m | ||||||||
Common Name | EUTSA_v10027930mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24297.2 Da PI: 7.1441 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W++ a+ g++Rt+k+c++rw++yl Thhalv10027930m 19 KGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRWLNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.6e-17 | 72 | 115 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T+eE++++ ++++++G++ W++Ia++++ gRt++++k++w++ Thhalv10027930m 72 RGNITAEEQLIIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNFWRT 115 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.917 | 14 | 66 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 14 | 69 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.24E-30 | 17 | 113 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.1E-13 | 18 | 68 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 19 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.35E-10 | 21 | 66 | No hit | No description |
PROSITE profile | PS51294 | 24.092 | 67 | 121 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-24 | 70 | 120 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-14 | 71 | 119 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 72 | 115 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.57E-11 | 76 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 215 aa Download sequence Send to blast |
MEKRGSSGGS GSGDAEVRKG PWTMEEDLIL INYIANHGEG VWNSLAKSAG LKRTGKSCRL 60 RWLNYLRPDV RRGNITAEEQ LIIMELHAKW GNRWSKIAKH LPGRTDNEIK NFWRTKIQKY 120 IIKQGETTNV GSQSSEMIND RATSTSHVLN AQETMDIYSP LTSYQQTNNT DHQFNYGNYV 180 PSSDSIMMPL AVDQSEENCW SVDDLWPMHL FGGN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 14 | 121 | 22 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting redundantly with MYB21 and MYB57 to control stamen filament elongation in the late developed flowers. Contributes with MYB21 to induction of MYB108 by jasmonate. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:16805732, ECO:0000269|PubMed:16972096, ECO:0000269|PubMed:19091873, ECO:0000269|PubMed:19325888, ECO:0000269|PubMed:21447791}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10027930m |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by jasmonate. {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF175987 | 0.0 | AF175987.1 Arabidopsis thaliana putative transcription factor (MYB24) mRNA, complete cds. | |||
GenBank | AY519632 | 0.0 | AY519632.1 Arabidopsis thaliana MYB transcription factor (At5g40350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006405505.1 | 1e-160 | transcription factor MYB24 | ||||
Swissprot | Q9SPG9 | 1e-128 | MYB24_ARATH; Transcription factor MYB24 | ||||
TrEMBL | V4M3Y1 | 1e-159 | V4M3Y1_EUTSA; Uncharacterized protein | ||||
STRING | XP_006405505.1 | 1e-160 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G40350.1 | 1e-130 | myb domain protein 24 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10027930m |
Entrez Gene | 18022454 |
Publications ? help Back to Top | |||
---|---|---|---|
|