PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027860m
Common NameEUTSA_v10027860mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family NAC
Protein Properties Length: 304aa    MW: 34867.2 Da    PI: 9.2918
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027860mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-52211472128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPtdeelv++yLk+kv +k+l++ e ik+vdiyk++PwdLpk ++ +ekewyf+++rd+ky++++r+nr+t  g+Wkatg+d++++s+
  Thhalv10027860m  21 LPGFRFHPTDEELVSFYLKRKVLHKSLPF-ELIKKVDIYKYDPWDLPKLAAMGEKEWYFYCPRDRKYRNSTRPNRVTGGGFWKATGTDRPIYSS 113
                      69**************************9.89***************8778899***************************************8 PP

              NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       +++ +glkk+Lvfy+gra kg+ktdW+mhe+rl
  Thhalv10027860m 114 dSTRCIGLKKSLVFYRGRAAKGVKTDWMMHEFRL 147
                      55667***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5919189IPR003441NAC domain
PROSITE profilePS5100556.68620189IPR003441NAC domain
PfamPF023651.2E-2522147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVLVMDHEES NNVERFDDVV LPGFRFHPTD EELVSFYLKR KVLHKSLPFE LIKKVDIYKY  60
DPWDLPKLAA MGEKEWYFYC PRDRKYRNST RPNRVTGGGF WKATGTDRPI YSSDSTRCIG  120
LKKSLVFYRG RAAKGVKTDW MMHEFRLPSP SDSHNSSYPH YNNKKQHHNN NNKEIPSSDA  180
WAICRIFKKT NSVSSQRSIP QSWLYPANPV ANQYNLQSQT AHLLASTDVL SHIATRQNLS  240
SPPVDEPTSF TESVTAYFAS QMLGVPNESN YFNNLARALT NELPNVRSMV ESGFEMTSYS  300
TNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-542219319169NO APICAL MERISTEM PROTEIN
1ut4_B1e-542219319169NO APICAL MERISTEM PROTEIN
1ut7_A1e-542219319169NO APICAL MERISTEM PROTEIN
1ut7_B1e-542219319169NO APICAL MERISTEM PROTEIN
3swm_A1e-542219322172NAC domain-containing protein 19
3swm_B1e-542219322172NAC domain-containing protein 19
3swm_C1e-542219322172NAC domain-containing protein 19
3swm_D1e-542219322172NAC domain-containing protein 19
3swp_A1e-542219322172NAC domain-containing protein 19
3swp_B1e-542219322172NAC domain-containing protein 19
3swp_C1e-542219322172NAC domain-containing protein 19
3swp_D1e-542219322172NAC domain-containing protein 19
4dul_A1e-542219319169NAC domain-containing protein 19
4dul_B1e-542219319169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00537DAPTransfer from AT5G39820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027860m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0168761e-109AB016876.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MKM21.
GenBankCP0026881e-109CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
GenBankHG9686031e-109HG968603.1 Arabidopsis thaliana T-DNA flanking sequence, clone GK-027D08-028756.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014694.10.0LOW QUALITY PROTEIN: putative NAC domain-containing protein 94
SwissprotQ9FIW51e-177NAC94_ARATH; Putative NAC domain-containing protein 94
TrEMBLV4M4810.0V4M481_EUTSA; Uncharacterized protein
STRINGXP_006405595.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-167NAC domain containing protein 94