PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027791m
Common NameEUTSA_v10027791mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GeBP
Protein Properties Length: 380aa    MW: 42210.5 Da    PI: 10.0081
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027791mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573100.61.4e-31169256297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +fqr+w+eeDei+lLqG+i+++++ g ++  d+++f+e +kks sf+v+ksq++eK+r LKkK+ +k kk       +f+k+hdq +f+l+++i
  Thhalv10027791m 169 YFQRIWTEEDEITLLQGVIEYNKDYG-NSLVDTNGFFERMKKSFSFEVNKSQFTEKLRGLKKKYIDKGKK-------TFAKAHDQRAFGLCNII 254
                      79************************.8999************************************999.......9**************** PP

           DUF573  96 Wg 97 
                      Wg
  Thhalv10027791m 255 WG 256
                      *9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-25170256IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MSAKHSKLPA NASSSHEVID DVSSGKQTTN PETVKSKVSD SKSSDIDTSP VKIPAVKTTA  60
ETKNVEASAV DAGEAKKVES SSSGKSRKKK RSKETHEAGA AKKVKKDKKK RGRGGEETTK  120
KVESSVVKSE TKKRSIETDE PEASAKKFKG DPDEVDKKSG GEEEPQKIYF QRIWTEEDEI  180
TLLQGVIEYN KDYGNSLVDT NGFFERMKKS FSFEVNKSQF TEKLRGLKKK YIDKGKKTFA  240
KAHDQRAFGL CNIIWGPDGI LPPESAVKSK AKPDKSKKGL LVKEDDELPV FSLPKGELTV  300
KRQYFVSIAE SIVRSGVDES FVRRSWSNLA PEHKKTIEEQ WKDLQVQNFS KQNDMIQKVV  360
NQLAESSPSE VYSSFGSIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188110KKRSKETHEAGAAKKVKKDKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027791m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405880.10.0probable transcription factor At4g00390
TrEMBLV4M4W30.0V4M4W3_EUTSA; Uncharacterized protein
STRINGXP_006405880.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31328181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00390.13e-32DNA-binding storekeeper protein-related transcriptional regulator