PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027784m
Common NameEUTSA_v10027784mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family GRAS
Protein Properties Length: 414aa    MW: 45484.7 Da    PI: 5.445
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027784mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS365.38.5e-112454082374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkf 93 
                       +lLl+cAe v++++l++a++lL+++se++sp g++ +R++ayf++AL+ar+ +    + ++ lp s+  +   s++ +aal++f+ vsP++kf
  Thhalv10027784m  45 LSLLLRCAEYVATDHLREASTLLSEISEICSPFGSSPERVVAYFAQALQARVISsYLAGACAPLPESPLLTVFqSQKIFAALQTFNSVSPLIKF 138
                      689*************************************************99566777777766665443348888889999********** PP

             GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                      sh+taNqaI +a++ge+ vHi D+d++qGlQWp L++ LasRp++  s+RiTg+gs    s++ l +tg+rLa+fA++l +pfef+++  k  +
  Thhalv10027784m 139 SHFTANQAIFQALDGEDSVHIFDLDVMQGLQWPGLFHILASRPRKLRSIRITGFGS----SSDLLASTGRRLADFAASLSLPFEFHPIEGKIGN 228
                      ********************************************************....9**************************9888888 PP

             GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpr 277
                       +++++L ++pgEa++V+++   hrl+d ++s  +    +L+++++l+P+++++veqe++++++     Fl rf+eal+yysalfd+l  +l++
  Thhalv10027784m 229 LIDPSQLGTRPGEAVVVHWMQ--HRLYDVTGSDLD----TLEMIRRLKPNLITMVEQELSCDDGgggsCFLGRFVEALHYYSALFDALGDGLGE 316
                      99******************9..****99999999....*******************77754434449************************* PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                      es er +vE+ +l+ ei+nv+   g++ r r    ++W+e l+++GF+pv+l+ + a+qa lll + +++gy++ ee+g+l lgWkd +L+++S
  Thhalv10027784m 317 ESGERFTVEQIVLATEIRNVIVGGGKR-RRR----MRWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTAS 405
                      **********************99997.444....56********************************************************* PP

             GRAS 372 aWr 374
                      aW+
  Thhalv10027784m 406 AWQ 408
                      **6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.52418388IPR005202Transcription factor GRAS
PfamPF035142.9E-10945408IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MTAKRIDRDF PSSGDPSAVK RLKDLHFSED DTTLEDDDGG AINLLSLLLR CAEYVATDHL  60
REASTLLSEI SEICSPFGSS PERVVAYFAQ ALQARVISSY LAGACAPLPE SPLLTVFQSQ  120
KIFAALQTFN SVSPLIKFSH FTANQAIFQA LDGEDSVHIF DLDVMQGLQW PGLFHILASR  180
PRKLRSIRIT GFGSSSDLLA STGRRLADFA ASLSLPFEFH PIEGKIGNLI DPSQLGTRPG  240
EAVVVHWMQH RLYDVTGSDL DTLEMIRRLK PNLITMVEQE LSCDDGGGGS CFLGRFVEAL  300
HYYSALFDAL GDGLGEESGE RFTVEQIVLA TEIRNVIVGG GKRRRRMRWK EELSRVGFRP  360
VSLRGNPATQ AGLLLGMLPW NGYTLVEENG TLRLGWKDLS LLTASAWQSH PSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1415040725378Protein SCARECROW
5b3h_A1e-1415040724377Protein SCARECROW
5b3h_D1e-1415040724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027784m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533820.0AK353382.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-35-L03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405294.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLE4MXY50.0E4MXY5_EUTHA; mRNA, clone: RTFL01-35-L03
TrEMBLV4LW590.0V4LW59_EUTSA; Uncharacterized protein
STRINGXP_006405294.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]