PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027747m
Common NameEUTSA_v10027747mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 462aa    MW: 50242.6 Da    PI: 5.409
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027747mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1244.8e-39137196261
           zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                      ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ 
  Thhalv10027747m 137 PDKILPCPRCNSMETKFCYYNNYNVNQPRHFCKKCQRYWTAGGTMRNVPVGAGRRKNKNP 196
                      7899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-31133194IPR003851Zinc finger, Dof-type
PfamPF027019.1E-32139195IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.64141195IPR003851Zinc finger, Dof-type
PROSITE patternPS013610143179IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSDPAIKLFG KTIPLPELGG DSSISYTGVS TEHQDQNLVR LSDSCTGDDE GMGDSGLAGG  60
GGDDGGFRGR DSESEKEEKD NECQEEHREE ESLRDESSNV ATTSGITEKT ETTKAAKTEE  120
ESSQNGTCSQ ETKLKKPDKI LPCPRCNSME TKFCYYNNYN VNQPRHFCKK CQRYWTAGGT  180
MRNVPVGAGR RKNKNPASHY NRHVSVTSAE ATMQKAAIRT DLQHPNGTNL LTFGSDSVIC  240
ESMASGLNLA DKSMMKTQTV LQEPNEGGLK ITVPINPSNE EIGTISSLPK IPCVPGPPPT  300
WPYAWNGVSW TVVPFYPPPA YWGVSPGTWN SFTWMPQPNS PSSGSGPNSP TLGKHSRDEN  360
AAEPGTGFEE TESPGREKSK PERCLWVPKT LRVDDPEEAA KSSIWETLGI KKDEKADTFG  420
AFRSPNKEKS CLSEGKLPGR RPELQANPAA LSRSANFHES S*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269|PubMed:19619493}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00046PBMTransfer from AT5G39660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027747m
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269|PubMed:19619493}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3529390.0AK352939.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-18-K13.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405606.10.0cyclic dof factor 2
SwissprotQ93ZL50.0CDF2_ARATH; Cyclic dof factor 2
TrEMBLE4MWP20.0E4MWP2_EUTHA; mRNA, clone: RTFL01-18-K13
TrEMBLV4LTE00.0V4LTE0_EUTSA; Uncharacterized protein
STRINGXP_006405606.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137951825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39660.20.0cycling DOF factor 2
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]