PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027690m
Common NameEUTSA_v10027690mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family TALE
Protein Properties Length: 598aa    MW: 67787.3 Da    PI: 7.1718
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027690mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.26.6e-094034401954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  Thhalv10027690m 403 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 440
                      554459******************************88 PP
2BELL105.73e-34261332172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      e++elqk+kakLls+lee+++rY +y+eq+++ +++Fe+++g+g+a++Yt+lA++a+SrhFrcLkd +++qi
  Thhalv10027690m 261 EFMELQKRKAKLLSMLEELKRRYGHYREQMRIAAAAFETAVGVGAAEMYTALASRAMSRHFRCLKDGLVGQI 332
                      679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075266.1E-43186328IPR006563POX domain
SMARTSM005741.5E-68192330IPR006563POX domain
PROSITE profilePS5007112.017381444IPR001356Homeobox domain
SMARTSM003895.6E-9384448IPR001356Homeobox domain
CDDcd000861.11E-10384445No hitNo description
SuperFamilySSF466892.99E-17385452IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.5E-28387451IPR009057Homeodomain-like
PfamPF059207.8E-18401440IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MARDQFYGHN HHHQMINQIH GFDETNQNPT DHHHHHYNPQ IFGSNSNMGM MIDFSKQHQI  60
RMTSGMDHHH HHTSGGTDQN QLLEDSSSSM RLCSVNNDYP SEVNDDRPPQ RPSQGLSLSL  120
SSSNPTSISL QSFDHHRPQQ QQQGYSGKST HHQNLQHSQM MMMMVMNSHQ QNNNNNNDHH  180
HHQFPIGSSK YLSPAQELLS EFCSLGVKES DDEVMMMKHK RKQKGKQQEE WDTSNNNNDQ  240
HHDQSATTSS KKHVPPLHSL EFMELQKRKA KLLSMLEELK RRYGHYREQM RIAAAAFETA  300
VGVGAAEMYT ALASRAMSRH FRCLKDGLVG QIQATSQALG ERDEDNRAAS ISARGETPRL  360
RLLDQALRQQ KSYRQMSLVE AHPWRPQRGL PERAVTTLRA WLFEHFLHPY PSDVDKHILA  420
RQTGLSRSQV SNWFINARVR LWKPMIEEMY CEETRGEQME VTNPTFIDTK PDPNQIIRVE  480
PESLSSIVTK TGHKDNSNQG TASSSFGSTF DFSLYGNHAV TYAGEGGTRD VSLTLGLQNG  540
GVSLALSPVT AQAGPLYYGR DHMEGSVQYT ASMLDGDQAQ NLPYRNLMGA QLLHDMV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15390448563Homeobox protein Meis2
3k2a_B3e-15390448563Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027690m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528660.0AK352866.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-O06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405354.10.0homeobox protein BEL1 homolog
SwissprotQ388970.0BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLE4MWG90.0E4MWG9_EUTHA; mRNA, clone: RTFL01-17-O06
TrEMBLV4LWA40.0V4LWA4_EUTSA; Uncharacterized protein
STRINGXP_006405354.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.10.0TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]