PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027543m
Common NameEUTSA_v10027543mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 286aa    MW: 31895.8 Da    PI: 4.5606
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027543mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2621.4e-19147197255
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr ++ +g+++AeIrdp   + + +r++lg+f+ta eAa+a+++a+  l+g
  Thhalv10027543m 147 HYRGVRMRP-WGKFAAEIRDP---NrRGTRVWLGTFDTAIEAARAYDKAAFTLRG 197
                      7********.**********9...4334************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.7E-32146206IPR001471AP2/ERF domain
CDDcd000182.98E-29147205No hitNo description
SMARTSM003801.2E-35147211IPR001471AP2/ERF domain
PfamPF008479.5E-14147197IPR001471AP2/ERF domain
PROSITE profilePS5103223.709147205IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22147207IPR016177DNA-binding domain
PRINTSPR003671.7E-10148159IPR001471AP2/ERF domain
PRINTSPR003671.7E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MATPSEASAL FFIKKYLLDE LSPVPTLTTN RWMNEPVAPE SSSDFSIFGS FDQTGFDFPD  60
FETKPEIIDL VTPKFTEEVK AEIPLASSDS FTFQSNPRAV SGSIAQSNRK PPLKIAPPNR  120
TEWIQFATGN TQPEQLPGPE AAEGKRHYRG VRMRPWGKFA AEIRDPNRRG TRVWLGTFDT  180
AIEAARAYDK AAFTLRGSKA IVNFPLEVEM WNPRDDVGQN KRKRDGEEEE DVTVAEKVPK  240
TEESDAVEKT TSSLTAIDDW DLTEFLSMPL LSPLSPFGYP QLTVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-28142208166ATERF1
3gcc_A9e-28142208166ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9756931}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00437DAPTransfer from AT4G17490Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027543m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2367911e-156AC236791.1 Brassica napus clone JBr38I20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004766.10.0ethylene-responsive transcription factor 6
SwissprotQ8VZ911e-130EF103_ARATH; Ethylene-responsive transcription factor 6
TrEMBLV4LYD30.0V4LYD3_EUTSA; Uncharacterized protein
STRINGXP_006414222.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17490.11e-118ethylene responsive element binding factor 6