PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027536m | ||||||||
Common Name | EUTSA_v10027536mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 33400.5 Da PI: 4.7442 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.5e-18 | 107 | 157 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + ng r++lg+f taeeAa a+++a+ +++g Thhalv10027536m 107 KYRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFQTAEEAAMAYDKAAVRIRG 157 8********.**********44465..**********************99997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.8E-29 | 106 | 166 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 107 | 166 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.3E-12 | 107 | 157 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.6E-35 | 107 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-20 | 107 | 167 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.27E-28 | 107 | 166 | No hit | No description |
PRINTS | PR00367 | 6.6E-11 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.6E-11 | 131 | 147 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAFGNIQEPD GEILKNVWAN FIRKPEKTDE RPVHVPEVSR TWEALPTLDD DVPKESKESL 60 PGLEMSMEAK EWTEILDAIA SFPNETNHNT LTASSSLSSR VSCKTRKYRG VRRRPWGKFA 120 AEIRDSTRNG VRVWLGTFQT AEEAAMAYDK AAVRIRGIQK AHTNFQLETV FKAMEMDYVP 180 SYYPIQRSNT SQPIKEAIRG YDKVVDGMVE NRCALSYCST KEYSETCALL GSEETWLSSR 240 KRQRSDEDCM FQEVETGEMK KIVTGDETIC DVFGLFEFED LGSDYLDTLL SSF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-24 | 104 | 167 | 2 | 64 | ATERF1 |
3gcc_A | 6e-24 | 104 | 167 | 2 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00441 | DAP | Transfer from AT4G18450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027536m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414101.1 | 0.0 | ethylene-responsive transcription factor ERF091 | ||||
Swissprot | O49515 | 1e-161 | ERF91_ARATH; Ethylene-responsive transcription factor ERF091 | ||||
TrEMBL | V4MGA3 | 0.0 | V4MGA3_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414101.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18450.1 | 1e-146 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027536m |
Entrez Gene | 18030464 |