PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027510m
Common NameEUTSA_v10027510mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family HSF
Protein Properties Length: 136aa    MW: 15785.3 Da    PI: 10.4236
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027510mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind56.29.5e-18131072102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHH..HSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpk..yFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                      F + +y+ ++d++++++isw +n++sf++++  ef  ++L++      + f+ F+ +L+ YgF k++ e++        +eF hk+F +g+ +l
  Thhalv10027510m  13 FYRGIYRAVDDPSTDSIISWGKNNKSFIIWNAGEFLANILTNcrAMVCDDFKEFYSKLKEYGFVKISGEHR--------MEFGHKYFVRGRPDL 98 
                      667789**********************************984467789******************9995........7************** PP

                      XXXXXXXXX CS
     HSF_DNA-bind  94 lekikrkks 102
                      l+k++ k++
  Thhalv10027510m  99 LRKMQAKSH 107
                      *****9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.7E-209105IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-2010103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-1713104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-51336IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-1913103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.5E-56678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
MKLENFPIGL HFFYRGIYRA VDDPSTDSII SWGKNNKSFI IWNAGEFLAN ILTNCRAMVC  60
DDFKEFYSKL KEYGFVKISG EHRMEFGHKY FVRGRPDLLR KMQAKSHARS RRICFAAKQA  120
RERKLANGLD LLRIG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027510m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006413834.12e-97heat stress transcription factor A-4a
TrEMBLV4MIT05e-96V4MIT0_EUTSA; Uncharacterized protein
STRINGXP_006413834.19e-97(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50671450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G19630.12e-23HSF family protein