PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10027418m
Common NameEUTSA_v10027418mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 517aa    MW: 57868.4 Da    PI: 5.5823
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10027418mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3406.8e-1322971395
                     TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3 13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                     s++ ++p +f+++h + k +s++l+l++  s r Wev l  ++++    +++GWk F + + ++  D+++F++dg++ f  +v+
  Thhalv10027418m 22 SSNPMIPDSFISKHFNGKFQSTKLKLTSdASDRAWEVGL--DGQR----FADGWKTFSDHHCVRYDDVLIFRHDGDMVF--HVT 97
                     34479*********66678999****997899*******..8888....9***********************999998..655 PP
2B372.36e-23180272599
                      -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       +++++l+++ ++l +kfa+++g+++++  ++ l++e+g+sW++ l+++k+ g+ ++++GW++F+k+ngLk+  f+ F+ ++ s++++v++++ 
  Thhalv10027418m 180 HVTASNLSRNHICLTNKFARANGLNNRQ-CEIDLRNEEGKSWTMDLRHNKTTGQAFISRGWRSFCKENGLKAESFCRFECVQ-SGTKPVLQLCP 271
                      57889999999***********999766.5*************************************************877.99999*99997 PP

                      S CS
               B3  99 k 99 
                      +
  Thhalv10027418m 272 N 272
                      6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.5E-156101IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-138101IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.33410102IPR003340B3 DNA binding domain
SMARTSM010191.3E-1213102IPR003340B3 DNA binding domain
CDDcd100171.10E-92697No hitNo description
Gene3DG3DSA:2.40.330.102.9E-22170272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.77E-21172275IPR015300DNA-binding pseudobarrel domain
CDDcd100172.68E-20176271No hitNo description
SMARTSM010197.1E-28176273IPR003340B3 DNA binding domain
PROSITE profilePS5086313.352176272IPR003340B3 DNA binding domain
PfamPF023627.2E-22180272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-6312409IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-8312409IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-6314408No hitNo description
SMARTSM010193.2E-12315411IPR003340B3 DNA binding domain
PROSITE profilePS508637.57315411IPR003340B3 DNA binding domain
PfamPF023625.6E-9317409IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MDRVISSSTK KPIFVIDLSE QSSNPMIPDS FISKHFNGKF QSTKLKLTSD ASDRAWEVGL  60
DGQRFADGWK TFSDHHCVRY DDVLIFRHDG DMVFHVTPLG RSFSHQIQFL SSTSDDENDD  120
DDSGSEDNIF DDDDDDDNAD VKDDDDDGDD DYSTSEEDLY PKKTSSKKRA RSEKSYLVAH  180
VTASNLSRNH ICLTNKFARA NGLNNRQCEI DLRNEEGKSW TMDLRHNKTT GQAFISRGWR  240
SFCKENGLKA ESFCRFECVQ SGTKPVLQLC PNSSSIPDGN SSKVNEKRNV SETEGDEIES  300
PDRSQTAASM VQNRIFTLAL KPYMLRTGQL RLPASLSRGN GINEAGEITV VNKLGVEWKL  360
HLVNIKGRGQ FYIRRFKDCF VANGIKKIND SFTLEVVRGG TSPILKICTE ERKTPQTVQA  420
LRAGEATETP VQKRSRVCVE GGPSRCTRAS NKSSGEPENL QGKQPLQSCS ISDQVTKVKQ  480
SIVETLTDVK RFRSELEIKE QNLEASLLEI DELGMI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10027418m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024004602.10.0putative B3 domain-containing protein REM4
SwissprotQ9SB790.0REM4_ARATH; Putative B3 domain-containing protein REM4
TrEMBLV4MFL20.0V4MFL2_EUTSA; Uncharacterized protein
STRINGXP_006412574.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96581537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]