PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027401m | ||||||||
Common Name | EUTSA_v10027401mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ERF | ||||||||
Protein Properties | Length: 244aa MW: 26396.5 Da PI: 9.3822 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.5 | 1.1e-20 | 134 | 184 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp +ng +r++lg+fgtae+Aa a+++a+ +++g Thhalv10027401m 134 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFGTAEDAALAYDRAAFRMRG 184 8********.***********9987..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.29E-31 | 133 | 192 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.6E-32 | 133 | 192 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.907 | 134 | 192 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.1E-15 | 134 | 184 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.6E-23 | 134 | 194 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 2.3E-40 | 134 | 198 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 135 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 158 | 174 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MAAESDYAFL ESIRRHLLGE SEARLSESVA SSLTTGHGLK PVYGRNQSFS KLYPCFTESW 60 GDLPLKENDS EDMLVYGILN DAFHGGWEPS SSSSDEDRSS FPAVKTESFT EVDSVPAKKT 120 SVTSSVPAAA KGKHYRGVRQ RPWGKFAAEI RDPAKNGARV WLGTFGTAED AALAYDRAAF 180 RMRGSRALLN FPLRVNSGEP DPVRIKSKRG SCSENGAPKR RRTVASVNAA GQGTDMGLNV 240 KCV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-43 | 130 | 199 | 1 | 70 | ATERF1 |
3gcc_A | 2e-43 | 130 | 199 | 1 | 70 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 217 | 223 | PKRRRTV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027401m |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB008103 | 1e-146 | AB008103.1 Arabidopsis thaliana AtERF-1 mRNA for ethylene responsive element binding factor 1, complete cds. | |||
GenBank | AL161546 | 1e-146 | AL161546.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 46. | |||
GenBank | AY058174 | 1e-146 | AY058174.1 Arabidopsis thaliana AT4g17500/dl4785w mRNA, complete cds. | |||
GenBank | AY062533 | 1e-146 | AY062533.1 Arabidopsis thaliana Unknown protein mRNA, complete cds. | |||
GenBank | BT002578 | 1e-146 | BT002578.1 Arabidopsis thaliana Unknown protein (At4g17500) mRNA, complete cds. | |||
GenBank | CP002687 | 1e-146 | CP002687.1 Arabidopsis thaliana chromosome 4 sequence. | |||
GenBank | Z97343 | 1e-146 | Z97343.1 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 8. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006414221.1 | 1e-180 | ethylene-responsive transcription factor 1A | ||||
Swissprot | O80337 | 1e-127 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | V4MGL2 | 1e-179 | V4MGL2_EUTSA; Uncharacterized protein | ||||
STRING | XP_006414221.1 | 1e-179 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 1e-118 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027401m |
Entrez Gene | 18029998 |
Publications ? help Back to Top | |||
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