PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027229m | ||||||||
Common Name | EUTSA_v10027229mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 412aa MW: 46201.8 Da PI: 6.8523 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 24.5 | 3.6e-08 | 13 | 52 | 5 | 44 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 n+ r + + k ++KK E +LCd++ +vi +s+++ Thhalv10027229m 13 NENARATKLKKIWSALIKKVTEFTILCDVKLCVITYSPND 52 777788888888899**********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.0E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.012 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-13 | 2 | 94 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.26E-17 | 2 | 84 | No hit | No description |
Pfam | PF00319 | 2.0E-9 | 12 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MTRKKLKFEL VANENARATK LKKIWSALIK KVTEFTILCD VKLCVITYSP NDAAPMVWPS 60 VEKAGDLIRN FNALPDFEKM RKAMTLESFM TGKISKVEEK LRKLQKKNME HEIDKLMVQL 120 RGDRRMDDLD VNELKALLSF SKDKIMKLRK RVGSVEHRPL RDPFETQSEE PRTTTNDGFV 180 IGGGQDAERA RNTIEGDKTH YLMDGWVYPS PEPLNPLIHQ QIGIGMGSYN ADPNPRSYLP 240 FQGSYPPYQG SGISGNPNLQ MHPNVPPVMP FHGMLGSVSQ PLQHHDMNMD NNPIMAMSQP 300 MQNPNLEMHP IPPVLMPFHG MLGSVSQPLH HHDMNMNNNP IMAMNQPMQN PFDAMSGEER 360 NNFNIGGSQM ATNDGLRQEP PPPPPPNEAT AGEGNADATS FDTNRDWPGT N* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027229m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413962.1 | 0.0 | uncharacterized protein LOC18029575 | ||||
TrEMBL | V4LXK5 | 0.0 | V4LXK5_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413962.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4724 | 14 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40210.1 | 1e-83 | AGAMOUS-like 48 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027229m |
Entrez Gene | 18029575 |