PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10027010m | ||||||||
Common Name | EUTSA_v10027010mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | WRKY | ||||||||
Protein Properties | Length: 573aa MW: 62532.4 Da PI: 6.3153 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.7 | 1.5e-30 | 183 | 240 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkgse+prsYY+Ct+++C+v+kkvers+ +++++ei+Y Hnh+k Thhalv10027010m 183 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPTCEVTKKVERSR-EGHITEIIYAKAHNHPK 240 8****************************************.***************85 PP | |||||||
2 | WRKY | 100 | 1.5e-31 | 375 | 433 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC v+k+ver+++d + v +tY g+H+he Thhalv10027010m 375 LDDGYRWRKYGQKVVKGNPNPRSYYKCTANGCIVTKHVERASDDLTSVLTTYIGKHTHE 433 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 1.96E-24 | 180 | 241 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-27 | 180 | 241 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-32 | 182 | 240 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.343 | 183 | 241 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-23 | 183 | 239 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.0E-34 | 360 | 435 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-28 | 367 | 435 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.521 | 370 | 435 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.4E-35 | 375 | 434 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-24 | 376 | 433 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009846 | Biological Process | pollen germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 573 aa Download sequence Send to blast |
MAGFDSKIAV MGEWLDRNPP NHKKRSKAER DHRDVSLEDI KNKDFLQTSF QETPCYSSRG 60 GLSERIAARA GFNVPRLNTE SILQSPCLTI SSPGVSPATL LESPVFLSNP LPSPTTGKLL 120 SQPFGKAKDE FFDDIATSLA FQSISRRSLD PTNIGLEPHD SQDYEQTQLG GLGDSMPSGA 180 PADDGYNWRK YGQKLVKGSE YPRSYYKCTH PTCEVTKKVE RSREGHITEI IYAKAHNHPK 240 PPPNRRSGIG SSGTCLDMQI DGTEQESFGG TNENIEWTSP VSAELDYGSH SGSMQVQNGT 300 QFGYGDAVAD AFFKGEDEED GTSHMSVSLG YDGEVDESES KRRKLEAYAT EMSGSSRATR 360 EPKVVVQTTS DIDILDDGYR WRKYGQKVVK GNPNPRSYYK CTANGCIVTK HVERASDDLT 420 SVLTTYIGKH THEVPAARNS SSHVSPGSSG TLQGSLATQT HNHHVHYPVP HSRPEGLVTA 480 NSSLFDFQPH LRPPSGYSVY IGQTELSDLS MHGLAIGQEK LPGLPGPAIV DSAGLMLQLA 540 AEPKVEPVSQ QELGLSTSSL IYRDIMSRLP HI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-31 | 183 | 436 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-31 | 183 | 436 | 8 | 78 | Probable WRKY transcription factor 4 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Thhalv10027010m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413182.1 | 0.0 | probable WRKY transcription factor 34 | ||||
Swissprot | O65590 | 0.0 | WRK34_ARATH; Probable WRKY transcription factor 34 | ||||
TrEMBL | V4LVG8 | 0.0 | V4LVG8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413182.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14181 | 15 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26440.1 | 0.0 | WRKY DNA-binding protein 34 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10027010m |
Entrez Gene | 18029621 |
Publications ? help Back to Top | |||
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