PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Thhalv10026981m | ||||||||
Common Name | EUTSA_v10026981mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
|
||||||||
Family | HSF | ||||||||
Protein Properties | Length: 94aa MW: 10996.8 Da PI: 10.6247 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 24.9 | 5.1e-08 | 10 | 87 | 13 | 88 |
GGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTTXTTSEEEEESX.XXX CS HSF_DNA-bind 13 eelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekkskskekiweFkhks.Fkk 88 + +++isws+++++ +v+++ ef++k++++ nf+ F +L+ Y F k ++ + + + + eF hk+ F++ Thhalv10026981m 10 LSSESIISWSKSNKNSIVWNQGEFHRKIISRAILCLNFSRFFSKLKEYvTFWICKIKRFVKIKGSMQSEFGHKEyFER 87 56789*****999***********************************6799999999998888999*****996665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 0.005 | 4 | 91 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 5.17E-7 | 9 | 85 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 7.9E-9 | 10 | 88 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 1.5E-7 | 11 | 89 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 94 aa Download sequence Send to blast |
MGVQVSADDL SSESIISWSK SNKNSIVWNQ GEFHRKIISR AILCLNFSRF FSKLKEYVTF 60 WICKIKRFVK IKGSMQSEFG HKEYFERIKR SIP* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Thhalv10026981m |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006413834.1 | 3e-17 | heat stress transcription factor A-4a | ||||
TrEMBL | V4MJ23 | 2e-60 | V4MJ23_EUTSA; Uncharacterized protein | ||||
STRING | XP_006413944.1 | 4e-61 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5067 | 14 | 50 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Thhalv10026981m |
Entrez Gene | 18029560 |